Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26000 429 / 2e-147 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT3G04610 296 / 4e-94 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT1G51580 100 / 3e-22 RNA-binding KH domain-containing protein (.1) AT5G15270 96 / 7e-21 RNA-binding KH domain-containing protein (.1.2) AT5G53060 87 / 4e-18 RNA-binding KH domain-containing protein (.1.2) AT5G64390 84 / 7e-17 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 83 / 1e-16 RNA-binding KH domain-containing protein (.1.2) AT5G46190 73 / 1e-13 RNA-binding KH domain-containing protein (.1) AT1G14170 72 / 3e-13 RNA-binding KH domain-containing protein (.1.2.3) AT5G04430 46 / 3e-05 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G277200 [exp] 712 / 0 AT4G26000 427 / 2e-146 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.005G056100 [exp] 317 / 6e-103 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.013G043000 [exp] 316 / 1e-102 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 125 / 1e-30 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 107 / 8e-25 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 96 / 8e-21 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 95 / 1e-20 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 91 / 3e-19 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 86 / 9e-18 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020163 [exp] 491 / 7e-172 AT4G26000 414 / 3e-141 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10026963 [exp] 474 / 8e-166 AT4G26000 393 / 6e-134 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10005530 [exp] 309 / 1e-99 AT3G04610 593 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10006565 [exp] 306 / 2e-98 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10007236 [exp] 98 / 2e-21 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10030689 [exp] 97 / 2e-21 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 96 / 8e-21 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005232 [exp] 96 / 1e-20 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10000120 [exp] 91 / 1e-20 AT3G04610 132 / 1e-35 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 92 / 1e-19 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.018G004000.1 pacid=42801712 polypeptide=Potri.018G004000.1.p locus=Potri.018G004000 ID=Potri.018G004000.1.v4.1 annot-version=v4.1 ATGGACTCATCAGCCGCAACAACGCTCAGTTCAGAGCAAACAGAAGCAAACGCCATTAACAAGCGAGCAGAAACGGGAACGGAAGCACTGACAGAGGCAG GACAGCAACAAGGGCAGTCACAATCACAGGATAAGTGGCCGGGATGGCCAGGAGACAATGTGTTTAGGTTAATAGTGCCGGTATCGAAAGTAGGGAGCAT AATTGGACGGAAAGGAGAGTTGGTGAAGAAAATGTGTGATGAGACACGTGCTCGGATTCGTATTCTTGAAGGTCCTCTTGGTATTACTGATAGAATTGTT CTGATTTCTGGTAAAGAAGAGCCTGAAGCTCCACTATCTCCTGCAATGGATGCAGTATTGAGAGTGTTCAAGCGTGTGAGCGGTCTATCTCCTGGTGAGG GTGACAACACAGGTTCAGCCGCTGCTGCTGCTGCTGCTGGCTCTGCATTTTGTTCCATAAGGTTACTGGTTGCATCTTCACAGGCAATTAACTTAATTGG GAAGCAAGGATCCATAATCAAATCAATACAGGAAAACACTGGTGTAGTTGTGCGTGTTATGGCAGAAGATGATATACCCACATATGCTACTTCAGATGAG AGAATTGTGGAAATACATGGTGAAGCTATGAAGGTTTTTAAAGCATTAGAAGCAGTAATAGGACATCTAAGGAAGTTTTTGGTTGATCACAGTGTCATTC CTATATTTGAGAAAACTTACAATGCAACAATTTCACTGGAACGCCCTGCAGATGCCTGCGCTGATAATGCTCAGCCCTCGCTGCATTCTGCTCCTGCATT TTCAAGTGGGATTATTTCTGATTATTCCCTATCTTTGAAGCGGGATCCATCAATATATGAACATGAAACACATTTTGAACACAAAATCTCACAACCTGGA TTCTCACTTTATGGAGATCCTGGACTTGTTGGGTTACGTTCAACTGGACTTGGCCGTGCTACTGCTCCTATAGTAACTCAGGTGACACAGACAATGCAAG TACCTCTGTCATATGCTGAGGATATCATTGGTGTTGCTGGATCCAATATTGCCTATATTCGTCGTACCAGTGGGGCAATCCTTTCAATACAAGAGAGCAG AGGCTTGCCTGATGAGATCACCGTGGAAATTAAGGGTACCAGTTCTCAGGTTCAGATGGCGCAACAGCTTATACAGGAGTTCATTAGTAATCACAAGGAA CCAACGCCAAATATGTATGGGAAGATAGATGTAGGATTGAATGCATATTCACAAATTGCAGAAAGTGGCTACCCTTCATCCTCATTTACATCACATCTAG GAGGGTATGGATCCTCAAGTATAGGAGGGTATGGATCTCCCGGTGCAGGAGGTGCAGGAGGTTACAACAGTTATAGATATTGA
AA sequence Show only first row Show all	>Potri.018G004000.1 pacid=42801712 polypeptide=Potri.018G004000.1.p locus=Potri.018G004000 ID=Potri.018G004000.1.v4.1 annot-version=v4.1 MDSSAATTLSSEQTEANAINKRAETGTEALTEAGQQQGQSQSQDKWPGWPGDNVFRLIVPVSKVGSIIGRKGELVKKMCDETRARIRILEGPLGITDRIV LISGKEEPEAPLSPAMDAVLRVFKRVSGLSPGEGDNTGSAAAAAAAGSAFCSIRLLVASSQAINLIGKQGSIIKSIQENTGVVVRVMAEDDIPTYATSDE RIVEIHGEAMKVFKALEAVIGHLRKFLVDHSVIPIFEKTYNATISLERPADACADNAQPSLHSAPAFSSGIISDYSLSLKRDPSIYEHETHFEHKISQPG FSLYGDPGLVGLRSTGLGRATAPIVTQVTQTMQVPLSYAEDIIGVAGSNIAYIRRTSGAILSIQESRGLPDEITVEIKGTSSQVQMAQQLIQEFISNHKE PTPNMYGKIDVGLNAYSQIAESGYPSSSFTSHLGGYGSSSIGGYGSPGAGGAGGYNSYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	0	1
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	2.23	0.9043
					Potri.013G031800 [exp]	2.82	0.9218
AT1G61620			phosphoinositide binding (.1)		Potri.004G026800 [exp]	4.35	0.8867
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	4.47	0.9192
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.006G277200 [exp]	4.69	0.8845
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	5.09	0.8892
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	5.47	0.9059
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	8.36	0.9002
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	8.94	0.8962
AT2G43810			Small nuclear ribonucleoprotei...		Potri.010G178700 [exp]	9.21	0.8874

Compare expression of checked genes

Potri.018G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.