Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65940 393 / 6e-136 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 382 / 1e-131 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 377 / 1e-129 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 285 / 2e-93 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G31810 284 / 7e-93 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 257 / 1e-82 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 164 / 1e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G13360 157 / 5e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 73 / 1e-14 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16800 66 / 7e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G004200 [exp] 721 / 0 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 718 / 0 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 572 / 0 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 472 / 5e-166 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.014G179000 [exp] 408 / 1e-141 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 295 / 5e-97 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 280 / 2e-91 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G057400 [exp] 278 / 2e-90 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.002G057700 [exp] 244 / 2e-77 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038717 [exp] 411 / 9e-141 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 284 / 9e-93 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 283 / 3e-92 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 250 / 1e-80 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10007334 [exp] 242 / 1e-76 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10020758 [exp] 241 / 2e-76 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10042883 [exp] 226 / 1e-71 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 162 / 1e-45 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 136 / 1e-35 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 77 / 2e-15 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.018G004100.2 pacid=42800624 polypeptide=Potri.018G004100.2.p locus=Potri.018G004100 ID=Potri.018G004100.2.v4.1 annot-version=v4.1 ATGGCTATCCGTCACTGCTTCGACAAAGATGTTGACCAGGTGCTGTTCGAAGGAAATTCATGTGTGAAGAAGGTGATACTGAACAGACCACACAAGTTAA ACAGCCTCACCTATCACATGACCTGTCAGATGATCAAGGAGTTGAAAGCTTACGAGGTTGATCCTAAAGTCAAAATTGTGATATTGAAGGGGAATGGAAA GGCATTTTGTGCTGGTGGTGATGTCTTGGCATCATATACTTGTATGGTTGCAGGGCACTGGAGCTATGGAATAAATTTTTACAAGAAACAAATCATGTTG GACTACTTGGTTGCAACATATGGAAAGCCTGTGGTTGCAATTATTGATGGGATCGTGATGGGAGGTGGTGCTGGGCTATCCCTGCAGGGAACTTTCAGGA TTGTCACTGAAAATACTGTGTTCGCCATGCCAGAGACAGCAATAGGACATTTTACTGATGTTGGGTCATCATATTTCCTTTCCAGGCTCCCTGGATTTTT TGGTGAATATTTGGGACTTACTGGAACTAAGATTAGAGGAGCAGAAATGGTTGAGTGTGGCCTTGCAAATCATTTCATGCTCTCAAAGGATGTCCGTTTG TTGGAAACTGCACTAGATGAAGTAACTTCTTCTGATACGAAAACAATTTCTGAGATCATCAGCAAATTTATGCACAAACCAAATGTTAAACAGCATGGTG CTTTTAGCAGATTGGAGATCATCAACAAATGTTTCTCAAGAACAACAGTCGAAGAAATACTATCATCACTGGAGAGTGAGGCAGAAACTAGAGCAGAAAA GTGGATTCTTGAGGCAATCAACTGGATGAAATCAGCCTGTCCAACGAGCCTCAAAATTTCCCTTAGATCGATTAGAGAGGGCCGCACGCAAGGACTTGAG CAATGCCTCATCCAGGAATTTACTGTTGGTTCCCACATTGCGAGAAGAACAGTTAGCGATGATTTTTATGAGGGAACGAGGGCCATGTTGTTGGACAAAG ACAGAAATCCCAAGTGGGATCCTTCAAAGTTAGAGCTAGCGACTGATGAAATAGTGGACCGATATTTCTCCAGAGCTGATGAAGATTACATGGAATCCCT TCAACTTCCTACCAGATCCAACTTAGTTGATACCATGAGGCCAAAACTTTGA
AA sequence Show only first row Show all	>Potri.018G004100.2 pacid=42800624 polypeptide=Potri.018G004100.2.p locus=Potri.018G004100 ID=Potri.018G004100.2.v4.1 annot-version=v4.1 MAIRHCFDKDVDQVLFEGNSCVKKVILNRPHKLNSLTYHMTCQMIKELKAYEVDPKVKIVILKGNGKAFCAGGDVLASYTCMVAGHWSYGINFYKKQIML DYLVATYGKPVVAIIDGIVMGGGAGLSLQGTFRIVTENTVFAMPETAIGHFTDVGSSYFLSRLPGFFGEYLGLTGTKIRGAEMVECGLANHFMLSKDVRL LETALDEVTSSDTKTISEIISKFMHKPNVKQHGAFSRLEIINKCFSRTTVEEILSSLESEAETRAEKWILEAINWMKSACPTSLKISLRSIREGRTQGLE QCLIQEFTVGSHIARRTVSDDFYEGTRAMLLDKDRNPKWDPSKLELATDEIVDRYFSRADEDYMESLQLPTRSNLVDTMRPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004100 [exp]	0	1
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004150 [exp]	1.41	0.9880
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082700 [exp]	3.46	0.9870
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080300 [exp]	5.47	0.9876
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.005G218300 [exp]	6.24	0.9589	Pt-AUX28.2
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	8.94	0.9845
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	10.24	0.9840
AT5G39240			unknown protein		Potri.004G119600 [exp]	11.83	0.9838
AT1G63640			P-loop nucleoside triphosphate...		Potri.015G047400 [exp]	12.00	0.9022
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	12.32	0.9838
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	13.03	0.9836

Compare expression of checked genes

Potri.018G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.