Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65940 429 / 4e-150 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 408 / 1e-141 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 403 / 6e-140 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 300 / 4e-99 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G31810 299 / 1e-98 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 285 / 2e-93 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G13360 168 / 4e-48 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 168 / 5e-48 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT5G43280 73 / 1e-14 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16800 64 / 2e-11 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G004200 [exp] 795 / 0 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 742 / 0 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 603 / 0 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 495 / 4e-175 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.014G179000 [exp] 439 / 4e-154 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 315 / 7e-105 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 300 / 3e-99 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G057400 [exp] 299 / 1e-98 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.002G057700 [exp] 260 / 9e-84 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038717 [exp] 438 / 4e-151 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 303 / 6e-100 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 300 / 4e-99 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 272 / 4e-89 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10007334 [exp] 264 / 5e-85 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10020758 [exp] 261 / 6e-84 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10042883 [exp] 237 / 9e-76 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 173 / 7e-50 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 144 / 1e-38 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10011336 [exp] 75 / 7e-15 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.018G004150.1 pacid=42800424 polypeptide=Potri.018G004150.1.p locus=Potri.018G004150 ID=Potri.018G004150.1.v4.1 annot-version=v4.1 ATGGCTATCCGTCACTGCTTCGACAAAGATGTTGACCAGGTGCTGTTCGAAGGAAATTCATGTGTGAAGAAGGTGATACTGAACAGACCACACAAGTTAA ACAGCCTCACCTATCACATGACCTGTCAGATGATCAAGGAGTTGAAAGCTTACGAGGTTGATCCTAAAGTCAAAATTGTGATATTGAAGGGGAATGGAAA AGCATTTTGTGCTGGTGGTGATGTCTTGGCATCATATACTTGTATGGTTGCAGGGCATTGGAGCTATGGGACAAATTTTTACAAGAAACAAATCATGTTG GACTACTTGGTTGCAACATATGGAAAGCCTGTGGTTGCAATTATTGATGGGATCGTGATGGGAGGAGGTGCTGGGCTATCCCTGCAGGGAACTTTCAGGA TTGTCACTGAAAACACTGTGTTCGCTATGCCAGAGACCGCAATAGGACATTTTACTGATGTTGGGTCATCATATTTCCTTTCCAGGCTCCCTGGATTTTT TGGTGAATATTTGGGACTTACTGGAGCTAAGATTAGAGGAGCAGAAATGGTTGAATGTGGCCTTGCGACTCATTTTATGCTCGCAAAGGATGTCCGTTTG TTGGAAACTGCACTAGTTGAAGTAACTTCTACTGATACGAAAACAATTTCTGAGATCATCAGCAAATTTATGCACAAACCAAATGTTAAACAGCATGGTG CTTTTAGCAGACTGGAGATCATCAACAAATGTTTCTCGAGAACAACAGTTGAAGAAATACTGTCATCACTGGAGAGTGAGGCAGGAACTGAATCAGAAAA GTGGATTCTTGATGCAATCAACTGGATGAAGTCAGCCTGTCCAACCAGCCTCAAAATTTCCCTTAGATCGATTAGAGAGGGCCGCAAGCAAGGACTTGAG CAATGCCTCATCCAGGAATGTACTATTGTTTGCCACATTTTGAGAAGAACAGTTAGCAATGATTTTTATGAGGGAATTAGGGCCATCTTACTGGACAAAG ACAAGAATCCCAAGTGGGAGCCTTCAAAGTTAGAGCTAGTGACCGATGAAATGCTGGGCCGATATTTCTCCAGAGTCGATGAAGATGACATGGAACCCCT TCAACTTCCTACCAGATCCAACTTAGTTGATACCATGAGGCCAAAACTTTGA
AA sequence Show only first row Show all	>Potri.018G004150.1 pacid=42800424 polypeptide=Potri.018G004150.1.p locus=Potri.018G004150 ID=Potri.018G004150.1.v4.1 annot-version=v4.1 MAIRHCFDKDVDQVLFEGNSCVKKVILNRPHKLNSLTYHMTCQMIKELKAYEVDPKVKIVILKGNGKAFCAGGDVLASYTCMVAGHWSYGTNFYKKQIML DYLVATYGKPVVAIIDGIVMGGGAGLSLQGTFRIVTENTVFAMPETAIGHFTDVGSSYFLSRLPGFFGEYLGLTGAKIRGAEMVECGLATHFMLAKDVRL LETALVEVTSTDTKTISEIISKFMHKPNVKQHGAFSRLEIINKCFSRTTVEEILSSLESEAGTESEKWILDAINWMKSACPTSLKISLRSIREGRKQGLE QCLIQECTIVCHILRRTVSNDFYEGIRAILLDKDKNPKWEPSKLELVTDEMLGRYFSRVDEDDMEPLQLPTRSNLVDTMRPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004150 [exp]	0	1
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004200 [exp]	1.00	0.9908
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004100 [exp]	1.41	0.9880
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Potri.011G116800 [exp]	4.24	0.9841
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086500 [exp]	5.19	0.9654
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082700 [exp]	8.36	0.9804
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080300 [exp]	8.71	0.9831
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072741 [exp]	8.71	0.9689
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.005G218300 [exp]	8.94	0.9563	Pt-AUX28.2
					Potri.012G053400 [exp]	12.72	0.9762
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	13.19	0.9776

Compare expression of checked genes

Potri.018G004150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.