Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24830 500 / 2e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 205 / 2e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G65560 204 / 3e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 198 / 9e-55 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 194 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 194 / 5e-54 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 192 / 2e-53 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 192 / 3e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 191 / 7e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 192 / 1e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257300 [exp] 223 / 1e-64 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 221 / 5e-64 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 219 / 2e-63 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 215 / 8e-62 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 211 / 2e-60 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 207 / 3e-60 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 210 / 5e-60 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 210 / 5e-60 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 210 / 5e-60 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023863 [exp] 211 / 3e-59 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 208 / 2e-58 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 203 / 5e-57 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036020 [exp] 204 / 1e-56 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 198 / 2e-54 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008650 [exp] 196 / 6e-54 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 195 / 1e-53 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 194 / 1e-52 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 191 / 4e-52 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 191 / 4e-52 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G004400.1 pacid=42801095 polypeptide=Potri.018G004400.1.p locus=Potri.018G004400 ID=Potri.018G004400.1.v4.1 annot-version=v4.1 ATGGCTTTATGCATATCTTTTGGGGAATCATCGACAACGACAGTATCAGCACAAGTTTTGCTGCTTCGATTTTTTGAAAAAACCATTGAGAGTTTCAAGC ACAATGTTACTAATTTATTCTGTGGAGTCTTATCCTGTGAGCCCGTTTTAGATCCAGATTTAAGGAGGACTGGTGGGCAAGGCATGGATGCTGTTGTTGG TGATGAGTTTTCGAATAATAAGCAAGGCGATGGCGGAGGAGGAGACCCACTAGTTTTTAATGTATTGGATTCAATGCTTAAGGGTAGTTTGGATCGTTTG AAATCGATGAGGGATGATATCTCTTTGGTGAAGAAAGGCATTACAGGATGTGCGCTGGATGTTAATTGTGCAGGAAATGAAGCTATAATCAAGGATTTGT GTCTGGGGGGTAAGTTGGGACCAGCTTTATGGCTAAGGAGTAAAATGATTCAGAAAGGTTTTGTTCCCGATGTGCTGACACACAATTATATGGTGAATGG ACTGTGCAAAATGATTGAGTTGGAGAAGGCAGATTGGCTTATTAGGGAGATGCTAGACAAGGGTCCATCTCCCAACTGCGCCACATATAATACTTTTATC AAAGGTTATTGTCTTCTTGATAAGGTTGATAAAGCATTACATCTGTTTTCTTCTATGGCTAATAGTGGTACCAAACCAAATAGAGTTACTTTCAACACAC TTTTGCATGCACTCTGCAAGAAGGACCTTTTAACTGAAGGTAAGAAGCTTCTTGGAGAGATATTAGATGATGACGAAAAGGCAACATCAAATGTTATCAC CTCAACTATACTTATGGATTGTTCTATCAAGAGTGGAGATATAGTTCAGGCGCTTGGTATCTGGGATTCAATGGTGGAGGAGGGTACCCCAATGGATGTT ATCTCATATAATGTTCTTATCCACGGATTCTGTTTAGCCAGAGACATGAAACTTGCATATAGCTATTCTTGTCAAATGCTTAAAATGGGTCTACTGCCTG ATGTCTTCACATATAACACTCTTGTATCTAGCCTTTGCAAGAGTGGAAAGCTTGATGAGGCTTGTTACATACATGATGTGATGTTAAGAATGGGAGTTGC TCCAGATGAGGTTTCGTATAAATTAATAATTCAAGGCCTATGTGTTTGTGGGGATGTAGATAAGGCTAATGGTTATCTTAATTGTATGTTAGAGAAATCA ATGATACCAGAGCCTCTTGTGTGGAACCTCATAATTGATGGTTATGGGAGATGTGGAGATATTTGTAATGCATTTGCCATCAGAGATCGTATGTTGTCTT TTGGTGTTGTACCAAATGTGTTCACTTACAATGCATTGATCCATGCACAAGTAAAAATAGGAAACATTTTGTATGCATATTTTCTGAAAAAGGATATGCT TTTAAAGGGCCTTTTTCCGGATGTGGTTACTTACAATCTTTTGATCGGTGCAGCTGCTCATGCAGGACACATTCATTATGCTCTTCAATTATATGATGAA ATGCTTAGAGGGGGATGTAATCCAGACATGATAACTTACACTGAGCTAATTAGAGGTTACTGTGTGAAGTATAACACCAAGGAGGCAGAGGAACTTTTAG CCAAGTTATTGAAATCTGGTTTACTAATTGATCACGTTCCATTTCAAATACTAATTAAGCAGTACTGCAAAATGAAGGAGCCTGATAGGGCATTTCAGCT GTATCGGAAGTGGTTGGCTGGAAACAAGAGACTTTCCTCTTTGGAGATCCGGAGTCCTGCTAGGACAGTGCAAAATTACTAG
AA sequence Show only first row Show all	>Potri.018G004400.1 pacid=42801095 polypeptide=Potri.018G004400.1.p locus=Potri.018G004400 ID=Potri.018G004400.1.v4.1 annot-version=v4.1 MALCISFGESSTTTVSAQVLLLRFFEKTIESFKHNVTNLFCGVLSCEPVLDPDLRRTGGQGMDAVVGDEFSNNKQGDGGGGDPLVFNVLDSMLKGSLDRL KSMRDDISLVKKGITGCALDVNCAGNEAIIKDLCLGGKLGPALWLRSKMIQKGFVPDVLTHNYMVNGLCKMIELEKADWLIREMLDKGPSPNCATYNTFI KGYCLLDKVDKALHLFSSMANSGTKPNRVTFNTLLHALCKKDLLTEGKKLLGEILDDDEKATSNVITSTILMDCSIKSGDIVQALGIWDSMVEEGTPMDV ISYNVLIHGFCLARDMKLAYSYSCQMLKMGLLPDVFTYNTLVSSLCKSGKLDEACYIHDVMLRMGVAPDEVSYKLIIQGLCVCGDVDKANGYLNCMLEKS MIPEPLVWNLIIDGYGRCGDICNAFAIRDRMLSFGVVPNVFTYNALIHAQVKIGNILYAYFLKKDMLLKGLFPDVVTYNLLIGAAAHAGHIHYALQLYDE MLRGGCNPDMITYTELIRGYCVKYNTKEAEELLAKLLKSGLLIDHVPFQILIKQYCKMKEPDRAFQLYRKWLAGNKRLSSLEIRSPARTVQNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24830			Tetratricopeptide repeat (TPR)...		Potri.018G004400 [exp]	0	1
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	2.23	0.8696
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	10.95	0.8601
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	13.96	0.8536
AT2G40980			Protein kinase superfamily pro...		Potri.008G083300 [exp]	24.08	0.7726
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.014G076600 [exp]	24.49	0.7817
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	24.97	0.8399
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	26.22	0.8336
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	28.86	0.8358
AT2G19390			unknown protein		Potri.018G056400 [exp]	29.15	0.7781
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G054900 [exp]	38.96	0.8074

Compare expression of checked genes

Potri.018G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.