Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24810 236 / 2e-71 ABC1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003400 [exp] 385 / 3e-127 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.006G276600 [exp] 282 / 3e-88 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 90 / 6e-20 AT5G24810 956 / 0.0 ABC1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026970 [exp] 234 / 2e-70 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 234 / 2e-70 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 139 / 6e-37 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0013 [poplar] [flax] Beta-lactamase PF00144 [poplar] [flax] Beta-lactamase Beta-lactamase
Representative CDS sequence Show only first row Show all	>Potri.018G004500.2 pacid=42801176 polypeptide=Potri.018G004500.2.p locus=Potri.018G004500 ID=Potri.018G004500.2.v4.1 annot-version=v4.1 ATGGCTGACTGGGATGAATGTCTGAAATGGATTGCTATGTCAGCACCTGAGACTGAACCTGGCCAGGAGCAGTTGTATCACTATCTGTCTTTTGGCTGGC TTTGTGGTGGAATAATCGAGCATGCCTCTGGGAAGAAATTTCAGGAGATCCTTGAAGAAGCAATAGTTCGACCTCTCAACATTGAAGGCGAGCTATATGT TGGAATTCCTCCAGGTGCGGAATCTCGACTAGCGTCTCTGACATTAGATGAAGAAGATTTTAGCAAGCTCTCAAAAATTGCTAGTCGTCCTGAGCTTCCC TCCACCTTCCAGCCAGAGAACATTTCCCAACTAGTAACTGCAGTGCCTGCTTTGTTTAACATGCTGAACGTTCGTCGCGCCATTATACCAGGTGCTAACG GACATTGCTCAGCTCGTGCTCTTGCACGCTACTATGCAGCTCTTGTTGATGGAGGCCTGGTCCCACCACCTCATTCCTCTTTGTCCAAGCCACCCCTTGG TACCCACCCACACATTCTCAAATTTCCTTCAGAGATTACCTCCAAAAAGCAGAAAGGTAAAAAGAGTAAGGCAGCGGGTTCTACTTCAAAGAAAAAAGGA AATGGTTATGAGCTCAAGATGAATCACAGTAAAGATTTCAAGGATGGTGGAGAAAGTAACAGTGATGGGTATACCAGGCTTGCTAATGATAGCGCTGGTG GCAGCTGCAGTGATGCTAGTCCACCCAAAGGCTTTGCAGCCAGTGAAAACCCTCGCCAAAATAATGCCATCAGGATTTTTAATAACCCAGAATTCATGAT GAGTTCATGGGCGTGGGTGAATACAGGAATCTAG
AA sequence Show only first row Show all	>Potri.018G004500.2 pacid=42801176 polypeptide=Potri.018G004500.2.p locus=Potri.018G004500 ID=Potri.018G004500.2.v4.1 annot-version=v4.1 MADWDECLKWIAMSAPETEPGQEQLYHYLSFGWLCGGIIEHASGKKFQEILEEAIVRPLNIEGELYVGIPPGAESRLASLTLDEEDFSKLSKIASRPELP STFQPENISQLVTAVPALFNMLNVRRAIIPGANGHCSARALARYYAALVDGGLVPPPHSSLSKPPLGTHPHILKFPSEITSKKQKGKKSKAAGSTSKKKG NGYELKMNHSKDFKDGGESNSDGYTRLANDSAGGSCSDASPPKGFAASENPRQNNAIRIFNNPEFMMSSWAWVNTGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24810			ABC1 family protein (.1.2)		Potri.018G004500 [exp]	0	1
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	3.00	0.8549
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.018G137000 [exp]	14.66	0.7193
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	23.95	0.7769
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	31.74	0.7684
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	32.64	0.7229
AT2G14255			Ankyrin repeat family protein ...		Potri.001G287000 [exp]	34.49	0.7592
AT2G34930			disease resistance family prot...		Potri.015G025200 [exp]	38.34	0.6737
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	39.03	0.7811
AT3G11310			unknown protein		Potri.001G182200 [exp]	46.90	0.7674
					Potri.017G065250 [exp]	52.96	0.7296

Compare expression of checked genes

Potri.018G004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.