Plant FIBer expression Database

Potri.018G004901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31360 146 / 3e-44 selenium binding (.1)
AT2G24440 130 / 3e-38 selenium binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G276300
[exp]
80 / 2e-18 AT4G31360 0 / 1 selenium binding (.1)
Potri.018G004701
[exp]
54 / 6e-10 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026958
[exp]
138 / 6e-41 AT2G24440 137 / 6e-41 selenium binding (.1)
Lus10020159
[exp]
119 / 3e-31 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF10262 Rdx Rdx family
Representative CDS sequence
>Potri.018G004901.1 pacid=42800590 polypeptide=Potri.018G004901.1.p locus=Potri.018G004901 ID=Potri.018G004901.1.v4.1 annot-version=v4.1
ATGGCGCCTAGAAAGAAGGCTGAAGAGACGAAATCGACGTCGTCGGAGAAGCCAGCGACTAGGAGGTCGGCTCGGATGACTCGGAGCACAGCTAAGCGAT
TCAATGCGAAGCTGACTGAGTTACCGACCGAGTCGGGAAAGAAGAGAAAGCAAGAGAAAGCAGCAGAGAGTAAGGAGAAGAAGGTGAAGACTCATGTGAA
AGAAGAAGCGGAAACTAAGACTTCGTCTTCCTCGGAGGCTGAGGTGGAAGGTAAAGCAGAGGAAGTTGAAGAAGAAGAACCGGAGGCCGACGAGGACGGA
ACGAAAGAAGAAGATGCTAAGGAAGAGAGTCCCGCTGGTGATGCAGTTACTAAGACTATTGTGATTGAACATTGCAAACAGTGCAATGCATTCAAGACAA
GAGCTATTCAGGTGAAAGATGGTCTGTTGAGTGCCTTTCCTGGTATCTCCGTGTTACTCAATCCTGAAAAGCCTAGAAGGGGATGCTTTGAAATACGGGA
AGAAGGTGGGGAAACATTCATCAGTCTTCAGAACATGAAAAGACCGTTTCCACCTTTGAAGGCACTTGACATGGACCGAGTCATCTCGGATATAATTGAC
AGGGTCAGAAGCTCAACCAATGCATCTGGATGA
AA sequence
>Potri.018G004901.1 pacid=42800590 polypeptide=Potri.018G004901.1.p locus=Potri.018G004901 ID=Potri.018G004901.1.v4.1 annot-version=v4.1
MAPRKKAEETKSTSSEKPATRRSARMTRSTAKRFNAKLTELPTESGKKRKQEKAAESKEKKVKTHVKEEAETKTSSSSEAEVEGKAEEVEEEEPEADEDG
TKEEDAKEESPAGDAVTKTIVIEHCKQCNAFKTRAIQVKDGLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQNMKRPFPPLKALDMDRVISDIID
RVRSSTNASG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31360 selenium binding (.1) Potri.018G004901
[exp]
0 1
AT1G80710 DRS1 DROUGHT SENSITIVE 1 (.1) Potri.018G112500
[exp]
5.38 0.8267
AT3G13560 O-Glycosyl hydrolases family 1... Potri.001G006500
[exp]
6.48 0.8787
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Potri.014G025800
[exp]
8.36 0.8753 ALC.2
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Potri.019G040000
[exp]
8.48 0.8683
AT2G42260 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 ... Potri.006G057800
[exp]
10.00 0.8881
AT5G59970 Histone superfamily protein (.... Potri.008G047500
[exp]
10.58 0.8288
AT2G42120 POLD2 DNA polymerase delta small sub... Potri.006G192400
[exp]
11.13 0.7965
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.001G329700
[exp]
11.40 0.8387
AT2G07170 ARM repeat superfamily protein... Potri.006G079500
[exp]
11.83 0.8528
AT5G65360 Histone superfamily protein (.... Potri.003G207700
[exp]
12.00 0.8490

Potri.018G004901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.