Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) AT5G24880 59 / 2e-09 unknown protein AT5G39380 54 / 2e-07 Plant calmodulin-binding protein-related (.1) AT5G07820 52 / 5e-07 Plant calmodulin-binding protein-related (.1) AT5G61260 52 / 8e-07 Plant calmodulin-binding protein-related (.1) AT5G15430 50 / 2e-06 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274600 [exp] 542 / 0 AT5G24880 60 / 2e-09 unknown protein Potri.017G090200 [exp] 55 / 1e-07 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 50 / 2e-06 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 49 / 5e-06 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042442 [exp] 77 / 5e-15 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Lus10026227 [exp] 76 / 1e-14 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2) Lus10030701 [exp] 55 / 1e-07 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10034717 [exp] 50 / 6e-07 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 49 / 8e-06 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G005500.1 pacid=42800644 polypeptide=Potri.018G005500.1.p locus=Potri.018G005500 ID=Potri.018G005500.1.v4.1 annot-version=v4.1 ATGGCAACAAGTGCAACCAATAGCACCTTGAAGAAGGAGAAGAAGGCCACACCCTCTTCACATCCTCACACGAGTACTCGCAAGCAAGGAGTTTCAAGAC CAGCCAGCCCTTCATCAGGCTCCACGAACAAGGATAATTCCAGCACCCCATCAGGAAAACCTATCCCAAACTACCTCAAGCCTACGTTTAGCTCAAGACC TGAGCCCTTAAAACAAGTTAAGAAAACTGGCCATGAAGACACCACTCAAAAGCCTGCTCTTCTTAGAAGAAGATCCTTTGATAGGCCTCCATCTCTTCAT CACCATGTACAAAAACTAGACCCCTCATCAGATCCTAAAGAGAGACTGGGTCGGGACAGAATAATAGGCACTGCCCGATCTTCATCTTTTTCATCAAAAA ATGTTACTTCACCAAAAACTGTTGTGGACAGGAATGCCCCAACACATAAGCCAGGAAAATCTCATCAGCCACTGACTACAAGGACAATAGGGAGGAGTAT TAGTCTCTCTAACAAGAAAGTGACCAATGCTCCTGTTTTGCCGAAGGAGCCAGTTAGTCATGATGGAACTCTCAATTTGGATCTTGAAACCATGCTAGAA AGCAATGAAGAGTCTTTCTTGGCTCATGAAACTGAAGAGATACTGAATGATGTGAGCGAGGAACAAGTTCCTTCTGATTCACCAAAGGCTGAAAATGAGG AAGTGCATATTGATGCTGAAGAAACTGAAGTTAACAATGGTGAAGATGAGAAGCTCATCAAGGGTTCTAACATTCCCACGGTCGCTGGAGGAGAAATTAA TGTCTCCGCATTAGCTAAACCGGTTGAAGAAACAGAAACTGAGTTGCATCAAGAAAACGAAGACCAACTTGAAGGAGAGGATAATAATGGCAAATTAGAA GAAAGCATCAACGCTAATGCTAACCCTGAAGAGGGTATCGCAGATGAGGCTAAAGTTGAGGCTGTTGATAAAGAAAGAGTGGAAGAGAACATTGTGAACG ACAATGCAGTTTCTGATGAAGAACTTGTGGGTGAAGAAAAGAAGCATGAAGACATGAACCAAGGTAATGAAGGAAGTGAGGAACTTAAGCCCCATGAAGG ACAAGATCAAGTAGTGAAAAATGTTCATGAAGAAGAAAAAGCACCAGATGCAGCTGATTCGCAAAAGAAGCAAGTTGTACAAGGAAGCAAGAAGGAATCT CATGCTGCATACAATGATGTGATCGAAGAGACTAAGAATAAGCTACTTGAGGAGAGAAAGAACAAGGTGAAGGCACTGGTTGGGGCTTTTGAGACAGTCA TAGACTATGAATCTGGTTCTAAATAA
AA sequence Show only first row Show all	>Potri.018G005500.1 pacid=42800644 polypeptide=Potri.018G005500.1.p locus=Potri.018G005500 ID=Potri.018G005500.1.v4.1 annot-version=v4.1 MATSATNSTLKKEKKATPSSHPHTSTRKQGVSRPASPSSGSTNKDNSSTPSGKPIPNYLKPTFSSRPEPLKQVKKTGHEDTTQKPALLRRRSFDRPPSLH HHVQKLDPSSDPKERLGRDRIIGTARSSSFSSKNVTSPKTVVDRNAPTHKPGKSHQPLTTRTIGRSISLSNKKVTNAPVLPKEPVSHDGTLNLDLETMLE SNEESFLAHETEEILNDVSEEQVPSDSPKAENEEVHIDAEETEVNNGEDEKLIKGSNIPTVAGGEINVSALAKPVEETETELHQENEDQLEGEDNNGKLE ESINANANPEEGIADEAKVEAVDKERVEENIVNDNAVSDEELVGEEKKHEDMNQGNEGSEELKPHEGQDQVVKNVHEEEKAPDAADSQKKQVVQGSKKES HAAYNDVIEETKNKLLEERKNKVKALVGAFETVIDYESGSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10660			calmodulin-binding protein-rel...		Potri.018G005500 [exp]	0	1
AT3G13840	GRAS		GRAS family transcription fact...		Potri.001G168800 [exp]	4.47	0.9267
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.011G070100 [exp]	9.74	0.8898	WRKY65.2
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G079500 [exp]	17.40	0.9127	Pt-WRKY72.1
					Potri.001G019890 [exp]	21.21	0.9070
AT4G40020			Myosin heavy chain-related pro...		Potri.005G072400 [exp]	26.83	0.8188
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	29.34	0.9038
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G042650 [exp]	32.83	0.8964
AT3G05390			unknown protein		Potri.004G083800 [exp]	33.24	0.8971
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.017G098600 [exp]	34.05	0.8991
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139400 [exp]	34.40	0.9030

Compare expression of checked genes

Potri.018G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.