Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VHA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24520 1554 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT4G30190 1540 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1523 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G80660 1521 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 1518 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 1509 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G57350 1503 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G47950 1442 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 1439 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G60330 1321 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275000 [exp] 1708 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 1608 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1597 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G005900 [exp] 1526 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 1520 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1504 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.012G071600 [exp] 1455 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 1452 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G179800 [exp] 1439 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026946 [exp] 1617 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1578 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10024105 [exp] 1513 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042445 [exp] 1469 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026224 [exp] 1458 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10003259 [exp] 1439 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1439 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10040166 [exp] 1365 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1362 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10019593 [exp] 1331 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G006000.1 pacid=42800719 polypeptide=Potri.018G006001.1.p locus=Potri.018G006000 ID=Potri.018G006000.1.v4.1 annot-version=v4.1 ATGTCTAGTAAGGGCGGGATCAGCCTAGAAGAGATAAAAAATGAGTCTGTTGATCTGGAGAGGATTCCTATAGAGGAAGTGTTTGAGCAGCTCAAATGTT CAAGGGAAGGTCTTACTTCAGACGAAGGAGCCACCAGGCTTCAAGTTTTTGGACCAAACAAACTAGAAGAGAAAAAGGAGAGCAAGATTCTCAAGTTTCT GGGATTTATGTGGAATCCGTTGTCATGGGTCATGGAAGCTGCTGCATTGATGGCCATAGTCTTGGCAAATGGTGATGGAAGACCTCCAGATTGGCAGGAC TTTGTCGGGATCGTTGTCTTGTTGGTGATTAACTCCACTATTAGTTTCATCGAGGAAAACAATGCTGGTAATGCGGCAGCAGCCCTCATGGCTGGTCTTG CTCCTAAAACAAAGGTTCTGAGAGATGGCCGATGGAGCGAGCAAGACGCTGCAATCTTGGTTCCAGGAGACATTATCAGCATTAAATTGGGAGACATAGT TCCTGCAGATGCCCGTCTTCTTGAGGGTGATCCTTTGAAGATTGATCAATCTGCCCTTACAGGGGAGTCACTTCCTGTCACCAAGAACCCCTCTGATGAA GTGTTTTCTGGCTCAACATGTAAACAAGGTGAAATTGAAGCAGTTGTGATTGCCACCGGTGTGCACACCTTTTTCGGAAAGGCTGCCCATCTCGTGGACA GCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCCATTGGTAATTTCTGTATTTGCTCAATCGCTATTGGAATAATCATTGAGATTGTAGTCAT GTACCCAATACAAAAGCGCAAGTACAGAGATGGAATTGACAACTTGCTGGTTCTCTTGATTGGAGGAATTCCTATTGCTATGCCAACTGTTTTATCTGTC ACCATGGCTATTGGTTCCCATAGACTTTCTCAACAGGGTGCCATTACCAAGAGAATGACTGCCATCGAGGAAATGGCAGGAATGGATGTTCTCTGCAGTG ACAAGACTGGGACTCTCACTCTGAACAAGCTTACTGTTGACAAGAGCTTGATTGAAGTGTTTGCAAAGGGTGTGGAGAAGGAGCATGTTATGCTTCTTGC AGCGAGAGCTTCAAGGACGGAAAATCAGGATGCCATTGATGCTGCAATTGTTGGGATGCTTGCTGACCCAAAGGAGGCACGAGCTGGGATCAGAGAAGTT CATTTCCTTCCTTTCAACCCTGTGGACAAGAGGACTGCTCTGACTTACATTGATAATAATGGAAACTGGCACCGGGCTAGCAAGGGTGCCCCTGAGCAGA TCTTAACTCTATGCAATTGCAAGGAAGATGTTAAGAGGAAGGTTCATTCTGTGATTGACAAGTTTGCTGAACGTGGACTTCGATCTTTAGGTGTTGCAAA ACAGGAAGTACCTGAGAAATCAAAAGATGCTCCAGGGGCACCATGGCAACTTGTTGGTTTGCTGCCCTTGTTCGATCCTCCCAGGCACGACAGTGCTGAA ACCATTAGAAGAGCTCTCCACCTTGGTGTTAATGTTAAGATGATTACTGGGGATCAGCTCGCAATTGCTAAGGAAACTGGCAGGAGGCTTGGAATGGGAA CAAACATGTACCCCTCTTCTTCATTGCTCGGCCAAGATAAGGATGCTGCCATTGCAGCCCTCCCTGTGGATGAGTTGATTGAAAAGGCTGATGGATTTGC TGGAGTTTTTCCAGAACATAAATATGAAATTGTTAAGAGGCTACAGGAGAGGAAGCACATATGTGGAATGACTGGAGATGGTGTTAATGACGCCCCTGCT CTGAAGAAAGCAGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCCAGAGGCGCTTCCGACATTGTCCTCACTGAACCAGGACTTAGTGTTATTA TAAGTGCAGTGCTGACCAGCAGGGCTATATTCCAAAGGATGAAGAACTACACTATATATGCAGTTTCAATTACCATTCGTATTGTGTTTGGCTTCATGTT TATTGCCCTGATATGGAAGTTTGACTTCGCTCCATTCATGGTTTTGATCATTGCCATCCTAAATGACGGAACAATCATGACAATATCGAAGGATCGAGTG AAGCCATCTCCACTGCCAGACAGTTGGAAACTTAAAGAGATATTTAGTACTGGTGTTGTGCTTGGAGGTTACTTGGCACTAATGACAGTATTATTCTTCT GGATTATGAAAGACACAGACTTCTTCTCAGATAAGTTTGGCGTAAGATCACTGAGAGATAGCAAATATGAAATGATGGCGGCCTTGTACTTGCAAGTGAG TATTGTGAGCCAGGCCCTTATTTTCGTCACACGATCCCGCAGCTGGTCTTTTGTTGAACGTCCTGGACTTCTTCTTGTCAGCGCGTTTGTAGTCGCTCAG CTGATTGCGACATTGATAGCAGTCTACGCAAACTGGGGTTTTGCACATATCAAGGGGTGCGGCTGGGGATGGGCTGGAGTAATCTGGCTATTTAGCTTGG TGACATATCTGCCGCTTGATGTTCTCAAATTTGCAATCCGCTATATCTTGAGCGGGAAGGCTTGGGATAATTTCTTGGAGAACAAGACTGCCTTTACTAC AAAGAAAGACTATGGGAAAGAAGAGAGAGAAGCTCAGTGGGCCACAGCTCAGAGGACCCTTCATGGCCTCCAACCCGCTCAGACCAACACTATCTTTTCC GACAAGAGTAGTTACAGGGAGCTTTCTGAGATCGCAGAGCAAGCCAAGCGTAGGGCTGAGATGGCAAGGCTGAGGGAGCTGAACACCCTCAAGGGGCATG TGGAATCAGTGGTGAAGCTGAAGGGACTAGACATTGATACAATTCAACAACATTACACCCTTTAA
AA sequence Show only first row Show all	>Potri.018G006000.1 pacid=42800719 polypeptide=Potri.018G006001.1.p locus=Potri.018G006000 ID=Potri.018G006000.1.v4.1 annot-version=v4.1 MSSKGGISLEEIKNESVDLERIPIEEVFEQLKCSREGLTSDEGATRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGDGRPPDWQD FVGIVVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPSDE VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGIIIEIVVMYPIQKRKYRDGIDNLLVLLIGGIPIAMPTVLSV TMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFAKGVEKEHVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIREV HFLPFNPVDKRTALTYIDNNGNWHRASKGAPEQILTLCNCKEDVKRKVHSVIDKFAERGLRSLGVAKQEVPEKSKDAPGAPWQLVGLLPLFDPPRHDSAE TIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDAAIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPA LKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRV KPSPLPDSWKLKEIFSTGVVLGGYLALMTVLFFWIMKDTDFFSDKFGVRSLRDSKYEMMAALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVSAFVVAQ LIATLIAVYANWGFAHIKGCGWGWAGVIWLFSLVTYLPLDVLKFAIRYILSGKAWDNFLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPAQTNTIFS DKSSYRELSEIAEQAKRRAEMARLRELNTLKGHVESVVKLKGLDIDTIQQHYTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	0	1	Pt-VHA1.1
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	2.00	0.9461
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	2.44	0.9474
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	3.16	0.9451	CLV1.2
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	3.74	0.9555
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	7.00	0.9418
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.003G205100 [exp]	7.14	0.9252
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	7.93	0.9356	Pt-SYNC2.1
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	8.48	0.9237
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	9.48	0.9308
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	13.63	0.9418

Compare expression of checked genes

Potri.018G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.