Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31430 147 / 6e-38 unknown protein AT3G10650 49 / 2e-05 AtNUP1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275200 [exp] 776 / 0 AT4G31430 156 / 3e-41 unknown protein Potri.010G244700 [exp] 65 / 1e-10 AT3G10650 353 / 8e-102 unknown protein Potri.008G014800 [exp] 56 / 7e-08 AT3G10650 379 / 1e-110 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028861 [exp] 59 / 2e-08 AT3G10650 436 / 2e-131 unknown protein Lus10008959 [exp] 55 / 2e-07 AT3G10650 405 / 4e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G006200.7 pacid=42800713 polypeptide=Potri.018G006200.7.p locus=Potri.018G006200 ID=Potri.018G006200.7.v4.1 annot-version=v4.1 ATGTACGGCGTTTCCCGGCCTCCGAACCGACTCACCGAGTTCAAATCGGGCGGAAAAATTGTTCGACCCAGGCGAGCCACTACTCCTCGTCCCACTCCAT ACGACCGCCCAACCCCTCGCCTTTCCCCTGATTCCACCCCTCAAAACCCTAATTGGCTTTCTCGTCTCATTTTTTCTCCTTCTCGCTTGCTCGCCAACGG TGCCGGTAAAGTTTTCTCCTCCGTCTTCGGCTCCGAATCCTCCGATTCCTCCTCCGGCGACGAAGACGACGACGAAGACAGCGATGCCGTTTCCACTTCT GAGGGTGAAATGGAAGATACCATTGAAGATGGCGATGAAGGCAGTGCTTCTTCTCTAAGCGGTGAAAAGAAGAATCAAACAACTGAAATTGTTCATTACT CAAAAAAAGATCTCCCAGCTGTAGAGTGGAGGACTGGAACAATGCGTTTAATTGCACAGCTTCTAACGCAGGAAACGTTCACGAGGGAAGAATGCGACAG ACTAACACATATTATTAAATCAAGAGTTGTAGATTCTCCCATCATTAGAGGCACAGAAGATGGGAGACTGAGTGAGGTTCTGGACAAGACAGCTGGCGAT GATGTCGACACACCTGATCTCCGCAATACAGCTGTTAAAGAGGCTAAAAAATGGTTTGAGGGGAAGAAATTGGGGCCAAATTCAAAGCCAGTGGAGTGTG GAATCTGCACTCTCAACACTGCTCCACATGTTACTGAAGAAGAAGCAGGTTCACCAGTGGATTTGGCCAAATCTTACATGCAAGCTCGCCCACTATGGGC TTCTCCTTCCACAAACCATATCCAGTTGCAATCCCCATCATCAATGGGAAAAGAGCTTTTTAAGGAAGCAACACCATTTTCAGTTGGTGGCAAGTCACTG TCCCCATCAAAGTTGAACTGGGATTCCCCTGTCACTGGTTCGTGGAATATTCAGGAAGAACTACGTAAAGTGAGATCCAGGGCAACTGAAGAGATGCTAA GGACTCGACCGTCTTCCAAAATTGATTGGTCTGCATTAGCTTCAGTTTATAAAGGAGGTCCTAGTTTATTGTGTACTGGAGAAGTTGGTGGTGCTAAAGA TAAATTTTCCAACTTTACACAATTAGTAGATGTACCTTTGACGTGGGGCAGTGCAGCAACTACTTCTGGCTTGACAGATTCTCAGATGGCACAAGATAAG TTGCAGAATGAAGCTTTTCCACCTAATGCAGCTACTTCTGTTCCTGAAAAAAGTCAGGATCTGGGATCAACACCGACCATTGAGTGTAGGGCAGGCTTGC CAGATGGCTCTGAAGCGATATCAAGCCATGTACAGCAACAACAGCTTTCAGAAGAAGTGATAGTAAAACAAAGTGCTGATGCCAACATTGCTGCTCCTGC TCCTGCTCCTGGCCTTGGAGACGTCGAGGAGACTAGCCACCCTTCAAGCTCCATGGCAGAAACTGTTAGAGATTCAATGTTACTTGAAGTAAATTATATA GCATCCAAGGAAGTTGCTGGAAGAGATGATGCATTTACTACCAATGGCTGCCCTTCTTCAGCATACAGTTTGCCTGCAGTACACTACGGAGAACAGAAGT CTATGCTGTCTGGCAAAGAACACAGTTTAGTTGGTCCAGATCATGACAAGGTGACAAGAACTGCTCCTGGAGAGGAAACCTGCGAGCTTCTGAGTGAGGC TTCCATGGAGGTGCCAAACGATAATGAAATTGTTGGTTTTGCTAATGACTCTGAAGACAGCTCCAGCATGTACCAGGGAGGGTTAGTACAGGCTGTGGCT CGACCAAATCCAAAACGCCGCTCGGTATCCAGGACAACTGGTGCCAAGCAGCAAGGAAGAAACGTTAGGAGCAGAGACAATAGGAGAGGCAGAGGACGGG GTTATATACAACTTATAGAAATTGCATCGCATGCGCAGATTAATACTTGCTCCTCGTATGTTTTTTTTCAAGCTTCAAAGGAAAGAGAGAAAAAAGTTAT CCTAATACGGGCCGGGCCGGATTCAGGAACAGACCCACCTTACATAAACCTTCAACCCGACCGGTCGCTCGCTGACCAGTACAATCGACACTCTATGCCC TCTCTTACATAA
AA sequence Show only first row Show all	>Potri.018G006200.7 pacid=42800713 polypeptide=Potri.018G006200.7.p locus=Potri.018G006200 ID=Potri.018G006200.7.v4.1 annot-version=v4.1 MYGVSRPPNRLTEFKSGGKIVRPRRATTPRPTPYDRPTPRLSPDSTPQNPNWLSRLIFSPSRLLANGAGKVFSSVFGSESSDSSSGDEDDDEDSDAVSTS EGEMEDTIEDGDEGSASSLSGEKKNQTTEIVHYSKKDLPAVEWRTGTMRLIAQLLTQETFTREECDRLTHIIKSRVVDSPIIRGTEDGRLSEVLDKTAGD DVDTPDLRNTAVKEAKKWFEGKKLGPNSKPVECGICTLNTAPHVTEEEAGSPVDLAKSYMQARPLWASPSTNHIQLQSPSSMGKELFKEATPFSVGGKSL SPSKLNWDSPVTGSWNIQEELRKVRSRATEEMLRTRPSSKIDWSALASVYKGGPSLLCTGEVGGAKDKFSNFTQLVDVPLTWGSAATTSGLTDSQMAQDK LQNEAFPPNAATSVPEKSQDLGSTPTIECRAGLPDGSEAISSHVQQQQLSEEVIVKQSADANIAAPAPAPGLGDVEETSHPSSSMAETVRDSMLLEVNYI ASKEVAGRDDAFTTNGCPSSAYSLPAVHYGEQKSMLSGKEHSLVGPDHDKVTRTAPGEETCELLSEASMEVPNDNEIVGFANDSEDSSSMYQGGLVQAVA RPNPKRRSVSRTTGAKQQGRNVRSRDNRRGRGRGYIQLIEIASHAQINTCSSYVFFQASKEREKKVILIRAGPDSGTDPPYINLQPDRSLADQYNRHSMP SLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31430			unknown protein		Potri.018G006200 [exp]	0	1
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	1.00	0.8767
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.007G070100 [exp]	3.46	0.8492
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	9.05	0.8496
AT2G25580			Tetratricopeptide repeat (TPR)...		Potri.014G116600 [exp]	10.72	0.8317
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	10.95	0.8413
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	17.14	0.8261
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	19.77	0.8189
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	20.44	0.7967
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	24.97	0.8199
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	26.94	0.7990

Compare expression of checked genes

Potri.018G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.