Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FZF.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31420 463 / 1e-162 C2H2ZnF Zinc finger protein 622 (.1.2) AT2G24500 429 / 1e-149 C2H2ZnF FZF Zinc finger protein 622 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275300 [exp] 629 / 0 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2) Potri.002G149800 [exp] 49 / 7e-06 AT1G01930 527 / 0.0 zinc finger protein-related (.1) Potri.005G186700 [exp] 44 / 0.0001 AT1G43860 513 / 0.0 sequence-specific DNA binding transcription factors (.1) Potri.002G073200 [exp] 44 / 0.0002 AT1G43860 560 / 0.0 sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026949 [exp] 508 / 2e-180 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2) Lus10020150 [exp] 505 / 3e-179 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2) Lus10009236 [exp] 44 / 0.0002 AT1G01930 576 / 0.0 zinc finger protein-related (.1) Lus10038006 [exp] 44 / 0.0003 AT1G01930 575 / 0.0 zinc finger protein-related (.1) Lus10042780 [exp] 42 / 0.0006 AT1G43860 545 / 0.0 sequence-specific DNA binding transcription factors (.1) Lus10029749 [exp] 42 / 0.0008 AT1G43860 539 / 0.0 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding CL0361 [poplar] [flax] C2H2-zf PF12756 [poplar] [flax] zf-C2H2_2 C2H2 type zinc-finger (2 copies)
Representative CDS sequence Show only first row Show all	>Potri.018G006300.1 pacid=42800532 polypeptide=Potri.018G006300.1.p locus=Potri.018G006300 ID=Potri.018G006300.1.v4.1 annot-version=v4.1 ATGCCAGGACTAACTTGTAACGCTTGTAATAAAGAATTCAATGATGATGCTGAACAAAAACTCCATTACAAGTCTGAATGGCACCGTTACAATCTTAAAC GCAAGGTTGCTGGTGTTCCGGGAGTGACTGAAGCATTGTTTGTGGCTAGACAGTCTGCAATTGCTAAAGAGAAAGAGAAGAATGAAATCCCTATGCTTTA TAGTTGTGTTCTATGCAACAAGGGATATCAAAGTTCCAAAGCTCATGATCAGCACCTTAAATCAAGGAGCCATATACTGCGAGCTTCTCAAGGAACAAAC CAAGAAGAGGAGAATACTGTGATTAAACAGCTTCCTCGTCGTGAGGTGAATAAGCGTGCTGCGCAATGGGAGGCAGATGCTGGAGAAAGTGAAGAGAGTG AGGATGAGTGGGAAGAAGTTGGTTCAGATGAAGAGCTGGTTGCTGCGGCCACTAAGTCTTTGATTGGTTTGAATGTAAATGAGATGGCCTCTCTTGTTGA TATAGTTGAGGATGAAGAAGATGATGAGTTGTTGGATCCATCCTGTTGCTTCATGTGCGATCAAGAGCATGATAACATAGAAAGTTGCATGGCTCACATG CATAAGCAGCATGGGTTCTTTATTCCTGATGTCGAGTATTTGAAGGATCCAAAGGGTCTTCTTACATATCTTGGCCTCAAGGTGAAGAGGTATTACATGT GTATGTACTGCAATGACAAGCGTCAATCTTTCAACAGCTTGGAAGCAGTTAGGAAGCATATGGAAGCTAAAAGTCACTGCAAAGTACATTACGGTGATGG CGATGAGGATGAGGAAGCTGAGTTAGAAGACTTCTATGACTATAGTAGCAGCTACGTGGATGAGGATGGTAAACAACTTGCATTGGGTGACACTGCCAAC ATCGCAGCACTTGGTAGTGGTGATTCAGAGCTGATTATAACCACAAGATCTGCTAATAAAGTATCATCCAAAACTCTTGGTTCTCGAGAATATTTGCGCT ACTACCGCCAGAAGCCACGTCCATCGCCTGCAAATGATATGGCCATAACTGCTGCACTTGCCTCTAGATACCGGAGCATGGGGCTGGCAACTGTGCAGTC AAGAGAGCAAATGTTGAGGATGAAAGTCATGAAGCAAGTGAATCGATCAGCTGAGGCCATGCGCACCAAGATTAGCATGAAGAATAACGTTATTTGGGAC TTGCCCAAGAACGTCCTGTATTAG
AA sequence Show only first row Show all	>Potri.018G006300.1 pacid=42800532 polypeptide=Potri.018G006300.1.p locus=Potri.018G006300 ID=Potri.018G006300.1.v4.1 annot-version=v4.1 MPGLTCNACNKEFNDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFVARQSAIAKEKEKNEIPMLYSCVLCNKGYQSSKAHDQHLKSRSHILRASQGTN QEEENTVIKQLPRREVNKRAAQWEADAGESEESEDEWEEVGSDEELVAAATKSLIGLNVNEMASLVDIVEDEEDDELLDPSCCFMCDQEHDNIESCMAHM HKQHGFFIPDVEYLKDPKGLLTYLGLKVKRYYMCMYCNDKRQSFNSLEAVRKHMEAKSHCKVHYGDGDEDEEAELEDFYDYSSSYVDEDGKQLALGDTAN IAALGSGDSELIITTRSANKVSSKTLGSREYLRYYRQKPRPSPANDMAITAALASRYRSMGLATVQSREQMLRMKVMKQVNRSAEAMRTKISMKNNVIWD LPKNVLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	0	1	Pt-FZF.1
					Potri.010G061000 [exp]	2.00	0.8639
AT3G14470			NB-ARC domain-containing disea...		Potri.017G121700 [exp]	2.23	0.8423
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.001G029700 [exp]	2.44	0.8702
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	7.07	0.8670
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G114000 [exp]	8.00	0.8414
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	8.48	0.8420
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102750 [exp]	9.79	0.7933
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Potri.002G226700 [exp]	9.94	0.8401
					Potri.018G123400 [exp]	11.00	0.8382
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040100 [exp]	12.12	0.8168

Compare expression of checked genes

Potri.018G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.