Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10630 757 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G60390 288 / 2e-90 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 288 / 2e-90 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 288 / 2e-90 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 288 / 2e-90 GTP binding Elongation factor Tu family protein (.1) AT1G18070 276 / 1e-84 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT4G20360 151 / 2e-39 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 135 / 7e-34 GTP binding Elongation factor Tu family protein (.1) AT2G31060 73 / 3e-13 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 71 / 2e-12 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275500 [exp] 961 / 0 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.008G043100 [exp] 295 / 4e-93 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 295 / 4e-93 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 295 / 4e-93 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 295 / 7e-93 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 295 / 7e-93 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 295 / 7e-93 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 294 / 1e-92 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 294 / 1e-92 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020153 [exp] 790 / 0 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 764 / 0 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026953 [exp] 346 / 7e-112 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10019918 [exp] 296 / 3e-93 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 293 / 4e-92 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 293 / 4e-92 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 275 / 3e-85 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10041996 [exp] 275 / 2e-84 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 275 / 9e-84 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10026488 [exp] 256 / 1e-78 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.018G006500.2 pacid=42802150 polypeptide=Potri.018G006500.2.p locus=Potri.018G006500 ID=Potri.018G006500.2.v4.1 annot-version=v4.1 ATGCCTCGTAAGGTGAATTACGGAGTAGATTGTGACGATGGAGATTATGATGATTACGACGATGATTATGATGCAGAAGATGATGTGGAAGCAGCTGAGC CTATACACGAAACGGCCAAGTACAATGATAAGGTTAGACTATGGCGTTGCGCAATTTGCAATTATGATAATGATGAGAGCATGACTGCTTGTGATATTTG CGAGGTTATTCGGAATCCTGTCCCTGGCAGTATCAAGAGAGTTGGAGGAGGAGCCAAACTTTTCAACTCCAGATATCCGAACGTAACTGCTAGCATTACT GAGATTGTTAAAAGTTCAGATAAATCATCTGCATCGATGCCAAAAGGCAAACAAGGACAACAAATTTCTGATGGTTCTTCTGCTTCTATTTCAAAAGGCA GGCCTGGAGTGGATGAGGGCAATCAAAAGAAGAATGGTATAGTTGGCACTCAATCAAGCGATGAAACTTCAGATAGCACTTCATCAACGCCAAAAGGCAA AGATAAAAGTGTTGATTATAGCAGTTCTTCAACAAACAGGGGCGAGTCTCTTGGTCTTACAGGCAATTTGAATGAAATGTCCCTGTCTGATAAATCTGGA AAGTCGTACAAGGCTAGTGCTAAGAGGCACAAGTCATCTGCACAGTATCAACCAGATAAATGGATGCTCCCCAGCAAATCAGAAAATGCATTGACACAAC TGAATCTTGCAATTGTTGGCCATGTTGATTCTGGGAAATCAACACTCTCAGGTAGACTACTGCATCTTTTGGGACGAATAACCCAAAAGGAAATGCTCAA ATATGAAAGGGAGGCCAAGTTACAGGGCAAGGGGTCATTTGCTTATGCTTGGGCATTGGATGAGAGTCCTGAGGAGAGGGAAAGGGGAATAACTATGACA GTCGCTGTTGCTTATTTTGATTCCAAAAAATATCATGTTGTTGTGATTGATTCCCCAGGCCACAAAGACTTTGTCCCAAACATGATATCTGGGTCAACAC AAGCTGATGCTGCCATCCTTGTAATAGATGCCTCCATTGGGGGTTTTGAAGCTGGGATGGACAACAAAGGGCAAACTAGGGAACATGCACGTCTTATTAG AAGTTTTGGTGTTGACCAGATTATAGTCGCAGTCAACAAAATGGACGCAGTGGAGTACTCCAAGGATCGATTTGATTTGATTAGAACACAACTTGGAACA TTCCTTCATTCTTGTGGATTCAAGGATTCCTTGGTGTCATGGATTCCATTGAGTGCAGTGGAAAATCAAAATTTAGTTGCAGCTCCTTCTGATATTCGTT TGTCATCATGGTACTGTGGACCTTATCTGCTGGATGCAATTGATTCTCTTCAGCCACCAACAAGAGATTTCTCAAAACCTCTTCTCATGCCCATATGTGA TGTATTGATATCATCTTCACAAGGGCAGGTGTCAGCCTGTGGTAAATTGGAGGCTGGTGCTCTTCGAAGTGGAGTGAAGGTTTTAGTTATGCCATCAGGA GATGTGGGGACAGTTCGCTCCCTAGAAAGAGACTCTAAGGCTTGTGATGTCGCTAGAGCAGGAGATAATGTGACTGTCAGTCTCCTAGGCATTGATGGAA GTAATGTGATGACTGGAGGTGTTCTATGTCATCCTGACTTTCCTGTTGCAGTAGCACGACATTTTGAGCTGAAGGTGCTCGTGTTAGATTTGGAAATCCC ACTTGTGATTGGTTCTCAATTGGAATTCCACGGACACCACGCAAAGGAGGCTGCAAGAGTTGTTAAAATAATATCAGTACTTGATTCAAAGACAGGCAAG GTGACAAAGAAGGCGCCTCGCCGTCTTACCTCAAAGCAGAGTGCAGTGATTGAGGTGCTTTTGGACGGACCGGTTTGCATGGAAGAGTTCACAAATTGCA GAGCTCTTGGAAGAGTGTTTCTGAGAACATCAGGGAAAACCATTGCCCTCGGAATCATAACCGGGATTATAGAGGATCAGGGATAG
AA sequence Show only first row Show all	>Potri.018G006500.2 pacid=42802150 polypeptide=Potri.018G006500.2.p locus=Potri.018G006500 ID=Potri.018G006500.2.v4.1 annot-version=v4.1 MPRKVNYGVDCDDGDYDDYDDDYDAEDDVEAAEPIHETAKYNDKVRLWRCAICNYDNDESMTACDICEVIRNPVPGSIKRVGGGAKLFNSRYPNVTASIT EIVKSSDKSSASMPKGKQGQQISDGSSASISKGRPGVDEGNQKKNGIVGTQSSDETSDSTSSTPKGKDKSVDYSSSSTNRGESLGLTGNLNEMSLSDKSG KSYKASAKRHKSSAQYQPDKWMLPSKSENALTQLNLAIVGHVDSGKSTLSGRLLHLLGRITQKEMLKYEREAKLQGKGSFAYAWALDESPEERERGITMT VAVAYFDSKKYHVVVIDSPGHKDFVPNMISGSTQADAAILVIDASIGGFEAGMDNKGQTREHARLIRSFGVDQIIVAVNKMDAVEYSKDRFDLIRTQLGT FLHSCGFKDSLVSWIPLSAVENQNLVAAPSDIRLSSWYCGPYLLDAIDSLQPPTRDFSKPLLMPICDVLISSSQGQVSACGKLEAGALRSGVKVLVMPSG DVGTVRSLERDSKACDVARAGDNVTVSLLGIDGSNVMTGGVLCHPDFPVAVARHFELKVLVLDLEIPLVIGSQLEFHGHHAKEAARVVKIISVLDSKTGK VTKKAPRRLTSKQSAVIEVLLDGPVCMEEFTNCRALGRVFLRTSGKTIALGIITGIIEDQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10630			Translation elongation factor ...		Potri.018G006500 [exp]	0	1
AT3G24150			unknown protein		Potri.018G128700 [exp]	6.70	0.7541
AT5G58575			unknown protein		Potri.009G074400 [exp]	12.24	0.6873
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.015G014900 [exp]	12.80	0.7180
AT3G20480		AtLpxK	lipid X K, tetraacyldisacchari...		Potri.001G418800 [exp]	14.14	0.7333
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.006G026200 [exp]	16.97	0.6941
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	18.16	0.7079
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	20.78	0.7197	Pt-AAT.3
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	32.44	0.6847
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.018G031800 [exp]	34.08	0.6946
AT5G65760			Serine carboxypeptidase S28 fa...		Potri.007G008100 [exp]	45.54	0.6535

Compare expression of checked genes

Potri.018G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.