Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 61 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273566 [exp] 153 / 4e-49 AT5G57510 75 / 4e-18 unknown protein Potri.006G273500 [exp] 153 / 4e-49 AT5G57510 75 / 4e-18 unknown protein Potri.018G094100 [exp] 74 / 7e-18 AT5G57510 107 / 5e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026228 [exp] 75 / 7e-18 AT5G57510 62 / 6e-13 unknown protein Lus10042441 [exp] 74 / 1e-17 AT5G57510 64 / 9e-14 unknown protein Lus10028472 [exp] 64 / 2e-13 AT5G57510 87 / 1e-22 unknown protein Lus10033559 [exp] 51 / 9e-09 AT5G57510 84 / 1e-21 unknown protein Lus10009171 [exp] 50 / 3e-08 AT5G57510 88 / 6e-23 unknown protein Lus10017598 [exp] 49 / 7e-08 AT5G57510 80 / 6e-20 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.018G006800.2 pacid=42800792 polypeptide=Potri.018G006800.2.p locus=Potri.018G006800 ID=Potri.018G006800.2.v4.1 annot-version=v4.1 ATGGGGAAGCAGAAGTGGTCGGTTCTAGGCCCTTTGAAGAGGACTGTCAAGAAAATAAACTTTCTACTTAACTTCAGAAAATGGAGATTGGCTTCATCAA TTCTTTGGAATGCTTCTTCTTCTTCCTCCTCTGGAACTATAAGAAGGTTGAGCTTTAATGATCGAATTGGCTTACATGGGGTAATTGAAGATGTTGAATC AGATCATCAAAGCAAGCCGGTTCGAGCTCTTGAAAGGGTAAGAAGTCATGATGGGTCATCATCAGATGATGATGTTGACAAGAGGGCTGAGATTTTTATT ACTAATTTTCGACGGCAGCTGTTGATGGAAAGGCAGGTTTCTTTGCAGCTGAGGTACTACAGAGGGAATAGTTTTGGAAGGGATTATTGA
AA sequence Show only first row Show all	>Potri.018G006800.2 pacid=42800792 polypeptide=Potri.018G006800.2.p locus=Potri.018G006800 ID=Potri.018G006800.2.v4.1 annot-version=v4.1 MGKQKWSVLGPLKRTVKKINFLLNFRKWRLASSILWNASSSSSSGTIRRLSFNDRIGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFI TNFRRQLLMERQVSLQLRYYRGNSFGRDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57510			unknown protein		Potri.018G006800 [exp]	0	1
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G028700 [exp]	5.47	0.6861
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002501 [exp]	12.00	0.7265
					Potri.001G218201 [exp]	13.11	0.7557
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G038400 [exp]	14.14	0.6981
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086300 [exp]	17.88	0.6840
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	21.02	0.7629	SKP1.4
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002400 [exp]	21.35	0.6949
					Potri.011G041124 [exp]	23.66	0.7129
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	24.91	0.6959
AT1G10880			Core-2/I-branching beta-1,6-N-...		Potri.013G130500 [exp]	27.74	0.6468

Compare expression of checked genes

Potri.018G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.