Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31460 269 / 6e-92 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028995 [exp] 284 / 9e-98 AT4G31460 259 / 1e-88 Ribosomal L28 family (.1) Lus10013249 [exp] 282 / 4e-97 AT4G31460 268 / 6e-92 Ribosomal L28 family (.1) Lus10003683 [exp] 276 / 7e-95 AT4G31460 268 / 9e-92 Ribosomal L28 family (.1) Lus10030771 [exp] 112 / 2e-29 AT1G14740 139 / 1e-36 Protein of unknown function (DUF1423) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00830 [poplar] [flax] Ribosomal_L28 Ribosomal L28 family
Representative CDS sequence Show only first row Show all	>Potri.018G006900.1 pacid=42801230 polypeptide=Potri.018G006900.1.p locus=Potri.018G006900 ID=Potri.018G006900.1.v4.1 annot-version=v4.1 ATGGCTTTTAGAGGGAAGGAGATGATGAAGAAAATAATGTCTAAAATAGGAGGAGAGAAGAACTTGGCTCCTGGCGTTAAAGAAGCTCTCAAAAAAGCAA TTCCTAATAGCAAAGTTGTCATGAATCGAGCCAAACGTGGCCTTTTTGCTGGCCGTCATATCCAGTTCGGTAATCAAATTAGTGAAGATGGAGGTAACAA GAGTAGGAGAAGTTGGAAGCCAAATGTTCAGGATAAGAGACTGTTTAGTTACATCCTAGACCGCCATGTTCGAGTCAAAGTCACCACTCATGCTATCCGA TGCATAGACAAGGCAGGAGGGATTGATGAGTACCTGCTCAAGACTCCTTATCACAAAATGGACACAGAAATGGGCATCTTGTGGAAAGCCAAGATTGAGA AGCTATATGAAGAGCTTGGGAACATGGAGGTGGTTTTCTTTACACCTGAAGCTGAAGCCGATTTGGATCAGGACTTCAAAGATATGAGGCTAGAGCAGCG GGAGGCTCGCAAGCAATTAAGAAGGCAGATATATGGTTGGTCAGACAAACAGAAGCAGATTGAAGAACAACAGAAAGAAGATCTGGACAAACAGAAGCAG ATTGAAGAACAACAGGAAGATCTGAACCCTAACAGTTGGGGAGGAAATTCACATGATATTTTCAACAATCGGGGATCTAGTTATTATTAA
AA sequence Show only first row Show all	>Potri.018G006900.1 pacid=42801230 polypeptide=Potri.018G006900.1.p locus=Potri.018G006900 ID=Potri.018G006900.1.v4.1 annot-version=v4.1 MAFRGKEMMKKIMSKIGGEKNLAPGVKEALKKAIPNSKVVMNRAKRGLFAGRHIQFGNQISEDGGNKSRRSWKPNVQDKRLFSYILDRHVRVKVTTHAIR CIDKAGGIDEYLLKTPYHKMDTEMGILWKAKIEKLYEELGNMEVVFFTPEAEADLDQDFKDMRLEQREARKQLRRQIYGWSDKQKQIEEQQKEDLDKQKQ IEEQQEDLNPNSWGGNSHDIFNNRGSSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31460			Ribosomal L28 family (.1)		Potri.018G006900 [exp]	0	1
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.001G246500 [exp]	8.83	0.8479
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Potri.007G086800 [exp]	9.32	0.9114
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Potri.016G024300 [exp]	14.76	0.8400
AT5G23535			KOW domain-containing protein ...		Potri.004G062600 [exp]	15.58	0.8978
AT1G74050			Ribosomal protein L6 family pr...		Potri.009G065800 [exp]	16.55	0.9030
AT5G57290			60S acidic ribosomal protein f...		Potri.003G010200 [exp]	17.94	0.8930
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.004G085300 [exp]	21.35	0.8954	RPL24.1
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.013G058800 [exp]	21.77	0.7954
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Potri.005G080700 [exp]	26.17	0.8947
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.007G096300 [exp]	27.56	0.8929

Compare expression of checked genes

Potri.018G006900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.