Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24540 408 / 3e-142 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 283 / 1e-92 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 110 / 5e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 89 / 1e-19 SKIP4 SKP1 interacting partner 4 (.1) AT1G16250 84 / 1e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 80 / 2e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 79 / 4e-16 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G22040 76 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 71 / 2e-13 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G31350 68 / 2e-12 KUF1 KAR-UP F-box 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193800 [exp] 266 / 3e-86 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 115 / 1e-28 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 112 / 2e-27 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 94 / 4e-21 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 92 / 2e-20 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 90 / 9e-20 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.009G024000 [exp] 87 / 6e-19 AT1G31350 330 / 1e-110 KAR-UP F-box 1 (.1) Potri.005G170000 [exp] 85 / 8e-18 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 83 / 3e-17 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028121 [exp] 261 / 4e-84 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 261 / 6e-84 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 104 / 1e-24 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 102 / 6e-24 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 91 / 9e-20 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 89 / 2e-19 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 88 / 6e-19 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10033288 [exp] 79 / 6e-16 AT1G31350 362 / 3e-123 KAR-UP F-box 1 (.1) Lus10029329 [exp] 78 / 1e-15 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 76 / 7e-15 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.018G007100.1 pacid=42802106 polypeptide=Potri.018G007100.1.p locus=Potri.018G007100 ID=Potri.018G007100.1.v4.1 annot-version=v4.1 ATGGCGGATTTGAGTGAAAATCAAGAAAAAACCGAAGAGAAACATGTTGAGCCTCTGATTCCAGGGTTGCCCGATGAGGTAGCAGAGTTATGTCTTCTTT ACCTTCCATATCCTTACCAAGCTTTGGTACGTTCAGTCTCTTCATCATGGAACAGGGCAATAACAGACCCTGCTTTTCTTGTCTCCAAGAAAACTCTGTC CCTTGCCTTGCCGCATGTCTTCGTGCTTGCATTTCATAAATCAACGGCCAGGATCCAGTGGCAAGCTTTGGACCCTCGATCTGGCCGTTGGTTTGTCCTA CCCCCCATGCCTTGCCCGAAGACTGTTTGCCCACCAGCGTTTGCATGCACCTCATTGCCACGTCAAGGGAAACTATTGGTTTTGGGTGGGATGCGGTCGG ATACAGAGACTTCAATGGACAGCACCTTTATCTACCGTTCATCTACGAATCAATGGTCCATAGGGTCCCCGATGTTGACCCCGCGATCGTTCTTCGCCAC CGGGAATGTTAAAGGCAAGATCATAGCCGTTGGTGGTAGTGCGTCCGGGATTAGCGACTCAATCACAGCCGTTGAGTGTTACAACTCAGAGAGTGGGAAG TGGGGCCCAGCTGCTAAAATGCGCATGGGGCTAGCTAGGTACGATTCAGCTGTGGTTGGCAACAGAATGTACGTGACGGAAGGGTGGACGTGGCCCTTCA TGTTCTCACCAAGAGCAGGGATCTACGACGCCGACAAGGACACGTGGCAAGAGATGAGTAATGGGATGAGGGAAGGGTGGACGGGACTGAGCGTGGTGCT CGGTGATAGGTTGTTTGTGATATCAGAACACGGTGACTGCCCGATGAAGGTGTACGTCCCCGATCTCGACACGTGGCAGTACGTAGGCGGGGACAGGTTC CCCAGAGAGGCAATGCAGAGGCCCTTTGCCGTGAACGGAGTGGAAGGGAAAGTGTATGTGGTGTCCTGTGGGCTGAACGTGGCAGTAGGAAGTGTGTACG AGGCGGACAAAGGAGAGTTTTGTGTGAAATGGCAAGTTTTGGTCGCCCCAAGAGCTTTTCATGACTTTGCTCCTTCGAATTGTCAGGTGCTTTATGCCTA A
AA sequence Show only first row Show all	>Potri.018G007100.1 pacid=42802106 polypeptide=Potri.018G007100.1.p locus=Potri.018G007100 ID=Potri.018G007100.1.v4.1 annot-version=v4.1 MADLSENQEKTEEKHVEPLIPGLPDEVAELCLLYLPYPYQALVRSVSSSWNRAITDPAFLVSKKTLSLALPHVFVLAFHKSTARIQWQALDPRSGRWFVL PPMPCPKTVCPPAFACTSLPRQGKLLVLGGMRSDTETSMDSTFIYRSSTNQWSIGSPMLTPRSFFATGNVKGKIIAVGGSASGISDSITAVECYNSESGK WGPAAKMRMGLARYDSAVVGNRMYVTEGWTWPFMFSPRAGIYDADKDTWQEMSNGMREGWTGLSVVLGDRLFVISEHGDCPMKVYVPDLDTWQYVGGDRF PREAMQRPFAVNGVEGKVYVVSCGLNVAVGSVYEADKGEFCVKWQVLVAPRAFHDFAPSNCQVLYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24540		AFR	ATTENUATED FAR-RED RESPONSE, G...		Potri.018G007100 [exp]	0	1
AT3G17900			unknown protein		Potri.008G194632 [exp]	10.67	0.7967
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	11.13	0.8159	SAUR5
AT1G49160		WNK7	Protein kinase superfamily pro...		Potri.005G057300 [exp]	19.18	0.7963
AT3G57690		AGP23, ATAGP23	ARABINOGALACTAN-PROTEIN 23, ar...		Potri.016G052001 [exp]	25.09	0.7804
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.002G062700 [exp]	27.14	0.7773	PAB3.1
AT5G57830			Protein of unknown function, D...		Potri.006G181300 [exp]	29.83	0.7955
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	34.52	0.7808
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G118100 [exp]	35.67	0.7579
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	38.49	0.7827	Pt-ACR7.1
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	44.50	0.7815

Compare expression of checked genes

Potri.018G007100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.