Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106600 [exp] 59 / 1e-10 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Potri.016G106650 [exp] 50 / 1e-07 AT5G39040 60 / 9e-11 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.018G007201.1 pacid=42801372 polypeptide=Potri.018G007201.1.p locus=Potri.018G007201 ID=Potri.018G007201.1.v4.1 annot-version=v4.1 ATGCATACCAGAAAGAATCACCATCTTCAAAGATGTTGCGAAGTTAATAGCAACACAGAATTTGATATCTTGAAGATGATTGCTATTCTTAGAGCCTTTC CCTCCCTGCAAAAGCTATATTTAGAGACTTGTTCTTCAGAAGACATGGGCCGAGGAAAGCTTGAGCATAGTGAACATGTCCATAAGCATCTGAAGCAAGT TGAAATTGGTGGATTTTATGACACCTCAAACCAGATTGGATTCGCCATTTACTTGTTGGAACATGCTATTTCCCTAGAGCGGATGGTCATCAATCCTGTA GGGAAATATTGTTCTGCGTTGAGGCAGTCCTGGGATGAAGGAGAACGTGAAAAGGCTTATCGAAAACTGCATGAACCTGACGATCCACTGAATGTATCTG AATCTTTATGGGATTCGGCAATCAAGTTTAAACTGTTTAATGTATTAGGATGTGCCCTTCCTTTTGCCCTTTTGTGTCTGAAGTTCTCTGTTCTTGCTTG CTTTCTAAGCCCTTGTTGA
AA sequence Show only first row Show all	>Potri.018G007201.1 pacid=42801372 polypeptide=Potri.018G007201.1.p locus=Potri.018G007201 ID=Potri.018G007201.1.v4.1 annot-version=v4.1 MHTRKNHHLQRCCEVNSNTEFDILKMIAILRAFPSLQKLYLETCSSEDMGRGKLEHSEHVHKHLKQVEIGGFYDTSNQIGFAIYLLEHAISLERMVINPV GKYCSALRQSWDEGEREKAYRKLHEPDDPLNVSESLWDSAIKFKLFNVLGCALPFALLCLKFSVLACFLSPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.018G007201 [exp]	0	1
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.006G271480 [exp]	32.24	0.7379
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Potri.006G240100 [exp]	41.56	0.7471
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Potri.015G026801 [exp]	50.64	0.7434
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	55.99	0.7530
					Potri.014G013200 [exp]	57.79	0.6936
					Potri.010G142250 [exp]	78.99	0.7244
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	89.41	0.7390
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	95.24	0.6935
AT5G36930			Disease resistance protein (TI...		Potri.019G018800 [exp]	97.39	0.7398
AT1G26310	MADS	CAL1, AGL10, CA...	CAULIFLOWER, AGAMOUS-like 10, ...		Potri.012G100200 [exp]	104.84	0.7355

Compare expression of checked genes

Potri.018G007201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.