Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31480 1672 / 0 Coatomer, beta subunit (.1.2) AT4G31490 1661 / 0 Coatomer, beta subunit (.1) AT4G23460 76 / 1e-13 Adaptin family protein (.1) AT4G11380 69 / 1e-11 Adaptin family protein (.1.2) AT1G60070 61 / 4e-09 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G31730 54 / 8e-07 Adaptin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273300 [exp] 1878 / 0 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.001G101400 [exp] 80 / 6e-15 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 77 / 5e-14 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.004G235200 [exp] 61 / 3e-09 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.016G104700 [exp] 57 / 6e-08 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 51 / 5e-06 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.015G045600 [exp] 45 / 0.0003 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 44 / 0.0004 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039684 [exp] 1735 / 0 AT4G31480 1670 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 1734 / 0 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2) Lus10015105 [exp] 1725 / 0 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10027159 [exp] 1447 / 0 AT4G31480 1377 / 0.0 Coatomer, beta subunit (.1.2) Lus10027160 [exp] 235 / 1e-72 AT4G31490 237 / 3e-74 Coatomer, beta subunit (.1) Lus10028775 [exp] 82 / 2e-15 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 77 / 3e-14 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 77 / 5e-14 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 76 / 8e-14 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 64 / 4e-10 AT1G31730 1278 / 0.0 Adaptin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0159 [poplar] [flax] E-set PF07718 [poplar] [flax] Coatamer_beta_C Coatomer beta C-terminal region CL0545 [poplar] [flax] APCOP-app_sub PF14806 [poplar] [flax] Coatomer_b_Cpla Coatomer beta subunit appendage platform
Representative CDS sequence Show only first row Show all	>Potri.018G007400.1 pacid=42801642 polypeptide=Potri.018G007400.1.p locus=Potri.018G007400 ID=Potri.018G007400.1.v4.1 annot-version=v4.1 ATGGAGAAGTCTTGCACTCTTCTTGTGCATTTTGATAAAGGAACCCCAGCTATAGCTACAGAGATCAAAGAAGCACTTGAAGGCAGTGATGTGTCGGCGA AGATTGAAGCCATGAAGAAGGCAATTAGTCTTCTATTGAATGGGGAAACCTTACCACAGCTTTTTATCACCATAGTCAGATATGTCCTGCCATCAGAAGA CCACACGGTCCAGAAACTTTTGCTTTTGTATCTGGAGATTATTGACAAGAAGGACCAGAAGGGTAGGGTGTTACCAGAGATGATTCTCATTTGCCAAAAC CTGAGGAACAATCTGCAGCACCCCAATGAATACATTCGAGGGGTGACACTGAGGTTTCTCTGTCGATTGAATGAGACAGAAATAATTGAACCGCTTATCC CCTCAGTCCTCCAGAATCTTGAACACCGGCATCCGTTCATTAGGAGGAATGCTATCTTAGCTGTGATGTCCATTTATAAGCTTCCTCAGGGTGAGCAGCT TTTGGTTGATGCTCCTGAAATGATTGAGAAGGTTCTATCAACAGAGCAGGATCAATCAGCAAAGAGGAATGCATTTCTCATGCTATTTACTTGTGATCAA GATCGGGCCATTAATTACCTCTTGACCAATGTTGATAAGGTCTCTGAATGGGGTGAACTGCTGCAGATGGTTGTCCTAGAGTTGATTCGGAAGGTGTGCA GAACGAATCGGGGAGAGAAGGGAAAATACATTAAGATCATTATATCATTGCTGAATGCCCCTTCTAATGCGGTTATTTACGAGTGTGCTGGGACACTTGT TTCTCTGTCATCTGCACCTACTGCTATCAGAGCTGCTGCCAACACCTATTGCCAGCTTCTTCTCTCTCAGAGTGACAACAACGTGAAGCTTATTGTTCTT GATCGTCTGAATGAGCTCAAGTCTTCTCATAGAGAGATCATGGTTGACAGGATAATGGATGTGCTTAGGGCACTATCCAGCCCGAATCTTGACATTCAGA GAAAGACTCTAGATATTGTCCTTGAGTTGATCACCCCGAGGAACATCAACGAGGTTGTTCTCATGTTGAAGAAGGAAGTTATGAAGACTCAAAATGGAGA GCTTGAGAAGAATGGCGAGTACAGGCAGATGCTCATCCAAGCCATCCATTCTTGTGCCATCAAGTTCCCAGAGGTGGCGAGTACAGTGGTTCACCTGTTG ATGGATTTCCTGGGTGACAGTAATGTTGCTTCAGCCATTGATGTGGCAATATTTGTACGGGAGATAATTGAGACAAATCCGAAACTGAGGGTTTCAATTA TAACAAGACTGTTAGACACTTTCTACCAGATACGAGCTGCAAGGGTTTGCTGCTGTGCTCTCTGGATTATTGGCGAGTATTGCCTATCCCTCTCTGAAGT TGAAAGTGGTATTGCAACTATCAAGCAATGCCTGGGAGAGCTACCATTTTATTCAGTTTCAGAAGAAGGGGAAGCACCCACTGATGCTTCTAAGAACTCT CAACAACCAAGTTCTGTTACTGTTTCTTCTAGAAGACCTGCCATTCTTTCTGATGGGACTTATGCAACACAGAGTGCTGCTTCTGAAACTGCCTTTTCGC CTCCAAGCATTGTTCAGGGTTCATTAGCTGCTGGGAACTTGAGATCCCTTCTTCTGACTGGTGATTTTTTCCTCGGAGCAGTTGTGGCGTGCACTTTGAC AAAGCTTGTTCTGAGATTGGAAGAGGTGCAGCCTTCTAGGGGTGAAGTAAACAAAGTATCCACACAGGCATTGTTGATCATGGTCTCTATGATACAACTT GGGCAATCACCAGTCCTGTCACACCCAATTGACTGTGACTCTTATGATAGGATTGTCCTTTGCATAAGATTACTATGCAGTACAGGTGACGAGGTCAGGA AGATATGGCTGCAGTCTTGCCGTCAGAGTTTTGTCAAAATGCTTTCAGAGAAACAGTTGAGGGAAACTGAGGAACTAAAGGCAAAGGCTCAGGTTTCTTA TGCACAGCCAGATGACCTCATTGATTTCTACCATTTGAAGAGCAGAAAGGGTATGAGTCAGCTGGAGTTGGAAGATGAAGTTCAAGATGATTTGAAGCGA GCAACTGGGGAGTTCATCAAGGACAGGGATGATGCGAATAAGCTTAATCGCATCCTTCAGCTCACAGGATTTAGTGACCCTGTTTATGCTGAAGCTTATG TGACAGTTCATCACTATGACATTGTGCTTGATGTCACAGTGATCAACAGGACAACAGAAACTCTCCAGAATTTGTGCTTGGAACTTGCCACAATGGGTGA TCTGAAACTGGTGGAGCGGCCCCAGAACTACACCCTAGCTCCCGAGTCTAGTAGGCAGATAAAGGCCAACATCAAGGTGTCCTCAACAGAGACAGGAGTG ATTTTTGGCAATATTGTGTATGAGGCATCCAATGTACTTGAGCGGACAGTTGTTGTCCTTAATGACATCCATATTGATATCATGGATTACATCTCTCCTG CGGTTTGCACAGATACAGCTTTCAGGTCAATGTGGGCGGAGTTTGAATGGGAAAACAAGGTCGCTGTGAACACAATAATCCAAAGCGAGAAGGATTTTCT GGACCACATCATCAAGTCTACCAATATGAAGTGTCTCACCGCACCGTCCGCACTGGATGGTGACTGCGGTTTCCTGGCTGCAAATTTGTACGCCAAGAGT GTTTTCGGTGAGGACGCACTTGTTAACGTGAGCATCGAGAAGCAATTGGATGGGAAGCTTAGTGGGTACATCCGTATAAGGAGCAAGACCCAGGGAATAG CCCTCAGCTTAGGGGATAAGATCACTCTCAAGCAGAAGGGAGGCAGTTGA
AA sequence Show only first row Show all	>Potri.018G007400.1 pacid=42801642 polypeptide=Potri.018G007400.1.p locus=Potri.018G007400 ID=Potri.018G007400.1.v4.1 annot-version=v4.1 MEKSCTLLVHFDKGTPAIATEIKEALEGSDVSAKIEAMKKAISLLLNGETLPQLFITIVRYVLPSEDHTVQKLLLLYLEIIDKKDQKGRVLPEMILICQN LRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLEHRHPFIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLSTEQDQSAKRNAFLMLFTCDQ DRAINYLLTNVDKVSEWGELLQMVVLELIRKVCRTNRGEKGKYIKIIISLLNAPSNAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVL DRLNELKSSHREIMVDRIMDVLRALSSPNLDIQRKTLDIVLELITPRNINEVVLMLKKEVMKTQNGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL MDFLGDSNVASAIDVAIFVREIIETNPKLRVSIITRLLDTFYQIRAARVCCCALWIIGEYCLSLSEVESGIATIKQCLGELPFYSVSEEGEAPTDASKNS QQPSSVTVSSRRPAILSDGTYATQSAASETAFSPPSIVQGSLAAGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRGEVNKVSTQALLIMVSMIQL GQSPVLSHPIDCDSYDRIVLCIRLLCSTGDEVRKIWLQSCRQSFVKMLSEKQLRETEELKAKAQVSYAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKR ATGEFIKDRDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTTETLQNLCLELATMGDLKLVERPQNYTLAPESSRQIKANIKVSSTETGV IFGNIVYEASNVLERTVVVLNDIHIDIMDYISPAVCTDTAFRSMWAEFEWENKVAVNTIIQSEKDFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKS VFGEDALVNVSIEKQLDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	0	1
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	1.00	0.9836
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	1.41	0.9776
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	2.00	0.9661	LAC110c
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	4.00	0.9569
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	4.24	0.9698
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	4.35	0.9427
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	4.47	0.9615	COPE2.1
AT5G60980			Nuclear transport factor 2 (NT...		Potri.015G058700 [exp]	5.38	0.9368
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	5.47	0.9591
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	7.48	0.9575	Pt-FLA11.2

Compare expression of checked genes

Potri.018G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.