Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 338 / 5e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 325 / 1e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 286 / 9e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 284 / 4e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 276 / 9e-91 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 271 / 4e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 259 / 3e-84 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71691 259 / 9e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008406 [exp] 377 / 2e-130 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 376 / 7e-130 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 375 / 1e-129 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 373 / 1e-128 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 371 / 5e-128 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 371 / 6e-128 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 368 / 5e-127 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 358 / 1e-122 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 353 / 3e-121 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002775 [exp] 352 / 2e-120 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 349 / 4e-119 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 339 / 4e-115 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011999 [exp] 332 / 2e-112 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 326 / 6e-110 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 325 / 8e-110 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 324 / 1e-109 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 322 / 9e-109 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005414 [exp] 314 / 2e-105 AT5G45670 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 314 / 4e-105 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G008100.1 pacid=42800927 polypeptide=Potri.018G008100.1.p locus=Potri.018G008100 ID=Potri.018G008100.1.v4.1 annot-version=v4.1 ATGGCGCCTGCTCTTTTGCTAAAACCATCATGTTTGATCTTTATTTTACTAACTGTAGCATCAAGCATGCAACCTTATATCCTCGTAGCTGCATCAGTTC CTTGTTATTTCATATTTGGCGATTCCTTGGTTGATAGTGGCAATAATAATGGACTGTCTACAAGTGCAAAAGTCAATTATCCACCTTACGGGATTGATTT TCCTGCTGGCCCAACAGGAAGGTTCACTAATGGAAAAACCGTAGCAGATATAATCACCGAGCTTTTGGGTTTGAAAGATTATATTCAACCATTTGCCACA GCTACAGCATCAGAAATAATCAATGGTGTGAATTATGCATCTGGCTCCTCAGGAATTCGTGATGAGGCTGGACGTAATTTGGGTACTCATGTTGGCTTCA ATCAGCAATTAAACAACCACCAGATTACAATATCAAGCTTGACTAAAACTCTAAAAGATTCAACTGCAGCTCACCTTAATCAATGCCTATATACTGTTGG AATGGGCAGCAATGATTATATAAACGACTACTTTCTGCCTGGCTCCGCAACGAGTACTCAGTATACTCCTGATCAGTTTGCAGGTGTTCTTATCGATCAA TATTCTAAGCAAATCAGGACGTTGCACGATGCTGGAGCAAGAAAGATTGCCTTGTTTGGTTTAGGAGCAATTAGCTGCACTCCAAATTCAATTGTTTTAT TTGGCAAGAATGGTACATGTGCAGAGAGCATTACTGGTGCAGTTCAGCTTTTTAATGTCAGGCTAAAATCTCTTGTTGATCAACTCAATAAAGAATTAAC CGATTCGAAAGTTATTTATATCAATTCAATTGGAACGTTAAGAAGAAATCCTACTAAGCTTGGTTTCAAGGTCTTCAAATCTAGCTGCTGTCAAGTTAAC AATGCTGGTCTCTGTAATCCAAGCTCAACTGCATGTCCTAATAGAAACGAGTTCATATTCTGGGATGGTTTCCATCCTACAGAGGCTATGAATAAACTTA CAGCAGCAAGGGCGTTCCACGCTGCTGACCCTTCTGATGCTTATCCGTTTGGTATCAGCCAGCTAGTTCTTTAG
AA sequence Show only first row Show all	>Potri.018G008100.1 pacid=42800927 polypeptide=Potri.018G008100.1.p locus=Potri.018G008100 ID=Potri.018G008100.1.v4.1 annot-version=v4.1 MAPALLLKPSCLIFILLTVASSMQPYILVAASVPCYFIFGDSLVDSGNNNGLSTSAKVNYPPYGIDFPAGPTGRFTNGKTVADIITELLGLKDYIQPFAT ATASEIINGVNYASGSSGIRDEAGRNLGTHVGFNQQLNNHQITISSLTKTLKDSTAAHLNQCLYTVGMGSNDYINDYFLPGSATSTQYTPDQFAGVLIDQ YSKQIRTLHDAGARKIALFGLGAISCTPNSIVLFGKNGTCAESITGAVQLFNVRLKSLVDQLNKELTDSKVIYINSIGTLRRNPTKLGFKVFKSSCCQVN NAGLCNPSSTACPNRNEFIFWDGFHPTEAMNKLTAARAFHAADPSDAYPFGISQLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.018G008100 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.008G037200 [exp]	8.48	0.9407
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.013G049900 [exp]	11.48	0.9284
					Potri.013G018050 [exp]	25.00	0.9277
AT4G18490			unknown protein		Potri.011G063500 [exp]	25.09	0.9176
AT1G77680			Ribonuclease II/R family prote...		Potri.002G086400 [exp]	25.37	0.8412
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	25.80	0.9271	Pt-HSP18.4
					Potri.004G095550 [exp]	30.72	0.9154
AT1G53420			Leucine-rich repeat transmembr...		Potri.006G014066 [exp]	30.98	0.9032
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Potri.017G084000 [exp]	33.13	0.9109
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G056900 [exp]	36.87	0.9209	Pt-ATHSP101.1

Compare expression of checked genes

Potri.018G008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.