Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13480 330 / 8e-111 Protein of unknown function (DUF1262) (.1) AT1G13520 320 / 6e-107 Protein of unknown function (DUF1262) (.1) AT1G13470 315 / 6e-105 Protein of unknown function (DUF1262) (.1) AT1G13510 310 / 6e-103 Protein of unknown function (DUF1262) (.1) AT1G13530 306 / 2e-101 Protein of unknown function (DUF1262) (.1) AT1G13540 300 / 2e-99 Protein of unknown function (DUF1262) (.1) AT1G13550 293 / 3e-96 Protein of unknown function (DUF1262) (.1) AT1G13500 291 / 2e-95 Protein of unknown function (DUF1262) (.1) AT1G61600 271 / 1e-87 Protein of unknown function (DUF1262) (.1) AT1G13490 263 / 7e-85 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109500 [exp] 595 / 0 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 592 / 0 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 465 / 5e-164 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 465 / 6e-164 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 426 / 1e-148 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 351 / 5e-119 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031913 [exp] 354 / 9e-120 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 352 / 7e-119 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 278 / 4e-90 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 202 / 4e-63 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 119 / 5e-32 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 118 / 1e-31 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 79 / 2e-17 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 61 / 7e-11 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [poplar] [flax] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Potri.018G008300.1 pacid=42801508 polypeptide=Potri.018G008300.1.p locus=Potri.018G008300 ID=Potri.018G008300.1.v4.1 annot-version=v4.1 ATGTATGTGACTAGGCCTCTTTCGATGTACAAAAGAAATCCCTCAGCTCTTTCGTCAGCTCCTCCTGAAGGTTCAAATTCTGGTATATTGATAATACAAG ATGAAGAAGTTGATCTTACTTGTTGTTTTTGCTGCTCCAAGATCGATTTTGTCAAAGACCTGCCTTTCCCGCAGAACAAGAATCTAACAGTTAGCTACAC CACAACCACAGGTAATAATGGACAGAGTAATAATGGGCAGACGACTACTAACAGTAGTAACCAAGTTATCTTCATCCCTGTGCTTAATCAGCCACTGTCT TCCAACCGATACTACGTGATCGAGCGTCAAGGGAAGCATAAAGGGGAAGCACACACAAATGCTAAAGAGGAAGACGAAACAACGTGCTGTTTTGGCTTCT GTAGACATAATCCGGATAAGGAACCGCAGTCTTTCGACCCCAAGGACGTGTACGAGCAATTTGAGATTAGCAAGAGTAACAGGTTTGGTTACGTTTCAAA ATCGGTGGCTCCAGATGGCATCCCTCCAATTTTCTTAAGGAGAAAAGGCTGGACAGTGTCAACCTCAACTGCACGTGATTTTGAATTGAAGGAAGCAGCA GGCCTTGACAGAAATCTCCGAGCCCGCCTTCCAGATTTCCACTTGCCATTATCACAAAGAAGTTCTGCACCTGTTGCTGTAGGAAACTGGTATTGTCCTT TCATGTTTATCAAAGAAGGAAAACTGAAGGACCAGATGAGTATTTCAAGGTACTATGAAATGACACTGGAACAAAGATGGGAACAAATTTTCGCAAGTGA ATATAATTCTAGTGAAGGCAACTCTGTCGTTGTGGATGCTGTTGTTCAAAGAGAAACGGTTGCTGTTGCAGGTAGAGAAGCTGCACCTGACAAAAGGAAT GCAGTTGATGGGGTGATGTGGTTTAGGAGCTCCGGCGATGTTGGAGGAGAAGCAAGTGTGGGGTTGAGTTTAGAAATTGTGGGGGGGATGAAGTGGGAGC AAGAAAGAGCTGGATGGCTTGGCGGCGGCGGGAGTGATGTTACGGTGAAGAGAGTGGAGGAGTTCGGAGGGGTTGGTGGCTGGAAGAAATTTGGATGTTA CGTGCTGGTTGAGAGGTTTGTGTTGAGGAGAATGGATGGAAGCTTGGTGCTAACTTATGACTTCAAGCACACTCATCAAGTTAGGAGCAAATGGGAATGA
AA sequence Show only first row Show all	>Potri.018G008300.1 pacid=42801508 polypeptide=Potri.018G008300.1.p locus=Potri.018G008300 ID=Potri.018G008300.1.v4.1 annot-version=v4.1 MYVTRPLSMYKRNPSALSSAPPEGSNSGILIIQDEEVDLTCCFCCSKIDFVKDLPFPQNKNLTVSYTTTTGNNGQSNNGQTTTNSSNQVIFIPVLNQPLS SNRYYVIERQGKHKGEAHTNAKEEDETTCCFGFCRHNPDKEPQSFDPKDVYEQFEISKSNRFGYVSKSVAPDGIPPIFLRRKGWTVSTSTARDFELKEAA GLDRNLRARLPDFHLPLSQRSSAPVAVGNWYCPFMFIKEGKLKDQMSISRYYEMTLEQRWEQIFASEYNSSEGNSVVVDAVVQRETVAVAGREAAPDKRN AVDGVMWFRSSGDVGGEASVGLSLEIVGGMKWEQERAGWLGGGGSDVTVKRVEEFGGVGGWKKFGCYVLVERFVLRRMDGSLVLTYDFKHTHQVRSKWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13480			Protein of unknown function (D...		Potri.018G008300 [exp]	0	1
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.008G123700 [exp]	5.09	0.7960
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	9.05	0.8577
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	18.86	0.8495
AT5G56420			F-box/RNI-like/FBD-like domain...		Potri.016G106600 [exp]	20.39	0.8183
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	21.93	0.7853
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	22.13	0.8339
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153800 [exp]	22.64	0.8151
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	25.21	0.7649
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.008G092900 [exp]	27.33	0.8285
AT5G04000			unknown protein		Potri.016G044001 [exp]	28.00	0.8293

Compare expression of checked genes

Potri.018G008300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.