Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRKY11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31550 315 / 1e-106 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 292 / 1e-97 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT2G30590 156 / 2e-44 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT4G24240 155 / 2e-44 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT3G04670 148 / 6e-42 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT5G28650 147 / 2e-41 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT2G23320 146 / 4e-41 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT1G29280 106 / 1e-26 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 104 / 5e-25 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT4G01250 100 / 3e-24 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139300 [exp] 196 / 2e-60 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.006G072400 [exp] 192 / 3e-59 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2) Potri.005G141400 [exp] 172 / 4e-51 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.007G047400 [exp] 168 / 2e-49 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 161 / 2e-46 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 157 / 6e-45 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.002G043500 [exp] 155 / 2e-44 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G219500 [exp] 154 / 6e-44 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 152 / 7e-43 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026936 [exp] 330 / 2e-112 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10020136 [exp] 324 / 3e-110 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10041600 [exp] 159 / 1e-45 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10024864 [exp] 157 / 2e-45 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 156 / 1e-44 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10006261 [exp] 154 / 1e-43 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10021999 [exp] 152 / 3e-43 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10042538 [exp] 151 / 4e-43 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10033857 [exp] 150 / 2e-42 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10014745 [exp] 150 / 2e-42 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain CL0274 [poplar] [flax] PF10533 [poplar] [flax] Plant_zn_clust Plant zinc cluster domain
Representative CDS sequence Show only first row Show all	>Potri.018G008500.1 pacid=42802080 polypeptide=Potri.018G008500.1.p locus=Potri.018G008500 ID=Potri.018G008500.1.v4.1 annot-version=v4.1 ATGGCGGTAGAGCTGATGAGTTTTAACACAAAGATGGATGATCAGTCGGCTATACAAGAGGCTGCGTCACAAGGAATTAAGAGCATGGAACACTTGATCC GAATCATGTCTCACCAAAATAATCATCACGTTGCCGATTGCACTGACCTTACTGATGTAACCGTTTCCAAGTTCAAGAAAGTCATTTCCATCTTAAACCG AACAGGTCACGCCCGGTTCCGTCGTGGCCCGATTCAACCCAACCAGCCGGCCAAGTCTTCGTTTTCCCTCTCTCCACCCTCCACATCGACACAATCACCG CAATCACAGTCTCAGTCCCCCTCCTTCTCTCGCTTCCAAAACCTAACCCTAACTCCACAGCAAATCACAACTCCGGTCACCGCACCGGCGGCGCCGACGA GTCTGACGCTTGATTTCACGAAACCGAATATATTTAGCTCCAAGAGTGCAGAGATTGAGTTCTCGAAGGATAGTTTCAGTGTCTCTTCGAACTCGGCGTC GTTTATGTCGTCGGGGATAACCGGAGACGGCAGCGTTTCTAATGGAAAGCAAGGATCGTCGATTTTCTTAGGATCCGCTGGCAAGCCGCCGCTCTCGACG GTGCCGTACAGCAACAAGAAGCGGTGCCATGAGCATCATCATGATGACACTGTCTCTGGCTCCTCTAGTGGCAAGTGCCATTGCTCTTCCAAGAGAAGGA AGAATCGGGTGAAGAAAACAATCAGGGTTCCAGCAATAAGTTCAAAAATAGCTGATATTCCACCAGATGAGTATTCTTGGAGAAAATATGGTCAAAAACC AATCAAGGGATCACCATACCCAAGGGGATATTACAAGTGCAGTACAATGAGAGGGTGCCCGGCAAGGAAACATGTGGAGAGAGCAACAGATGATCCAGCC ATGTTGATTGTAACCTACGAGGGAGAGCACTGCCATACTCAAGGTGCAATGGAGGGTAACATGGCTGCCGGAACTGTTAACTTGGTGTTCGAGTCAACCA TGATGGTAGGGGAATAA
AA sequence Show only first row Show all	>Potri.018G008500.1 pacid=42802080 polypeptide=Potri.018G008500.1.p locus=Potri.018G008500 ID=Potri.018G008500.1.v4.1 annot-version=v4.1 MAVELMSFNTKMDDQSAIQEAASQGIKSMEHLIRIMSHQNNHHVADCTDLTDVTVSKFKKVISILNRTGHARFRRGPIQPNQPAKSSFSLSPPSTSTQSP QSQSQSPSFSRFQNLTLTPQQITTPVTAPAAPTSLTLDFTKPNIFSSKSAEIEFSKDSFSVSSNSASFMSSGITGDGSVSNGKQGSSIFLGSAGKPPLST VPYSNKKRCHEHHHDDTVSGSSSGKCHCSSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERATDDPA MLIVTYEGEHCHTQGAMEGNMAAGTVNLVFESTMMVGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	0	1	Pt-WRKY11.1
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	1.41	0.9391
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	1.41	0.9423	Pt-DOGT1.1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G034000 [exp]	1.73	0.9279
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.003G128800 [exp]	3.87	0.9189
					Potri.006G044200 [exp]	4.89	0.8954
AT1G64300			Protein kinase family protein ...		Potri.003G137000 [exp]	6.48	0.8844
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	7.21	0.9203
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	7.61	0.8754	NAC015
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033000 [exp]	8.00	0.9033
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	8.77	0.9046

Compare expression of checked genes

Potri.018G008500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.