Plant FIBer expression Database

Potri.018G008700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24580 570 / 0 FAD-dependent oxidoreductase family protein (.1)
AT5G24155 40 / 0.0007 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G272800
[exp]
661 / 0 AT2G24580 585 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042437
[exp]
540 / 0 AT2G24580 540 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Lus10026231
[exp]
536 / 0 AT2G24580 532 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Lus10020132
[exp]
462 / 2e-162 AT2G24580 501 / 6e-178 FAD-dependent oxidoreductase family protein (.1)
Lus10026933
[exp]
152 / 9e-05 AT2G24580 153 / 6e-43 FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.018G008700.1 pacid=42800741 polypeptide=Potri.018G008700.1.p locus=Potri.018G008700 ID=Potri.018G008700.1.v4.1 annot-version=v4.1
ATGGAATATTCCAGCCACCACTTTGATGTTATCGTTGTCGGTGCCGGCATTATGGGCAGCTCCACTGCATATCAACTAGCAAAAAGAGGTCAGAAAACGC
TCTTGCTGGAGCAATTTGATTTCTTGCACCACCGTGGATCCTCACATGGGGAGTCACGTACTATACGGGCAACTTACCCGGAAGACTACTACTGTGACAT
GGTCATGGAATCCTCGCAAAGTTGGGAGCAGGCCCAGTCAGAAATTGGCTACAAGGTTTATTTCAAAGCCCAGCAATTTGATATGGGCCCCTCCGATAAC
AAGAGTCTCCTATCGGTTATCTCTAGCTGTGAGAGGAAGTCCCTCCCTCATCAGGTCCTGGACGGACAACAAGTGGCTGACCGATTCTCCGGTAGGATTA
ACATACCGGAGAGTTGGGTTGGGGTGTTAACTGAAGTCGGCGGGGTTATAAAGCCCACCAAGGCAGTGTCCATGTTTCAAGCATTGGCATTTCAGAAGGG
TGCAGTTTTGAGGGACAACATGGAGGTGAAAAACATTGTTAAAGACGAGGCAAGAGGAGGGGTAAATGTGGTGGTTGCCAATGGCGAAGAGTATTGGGGT
AAGAAATGTGTCGTTACTGCTGGGGCTTGGATGGGCAAGTTGGTTAAAACGGTTAGCGGGCTTGAATTGCCTATACAAGCCTTGGAGACTACAGTGTGTT
ATTGGAGGATCAAGGAGGGGCACGAGGCAAAGTTCGCCATTGGAAGTGATTTCCCTACGTTTGCAAGCTATGGCGAGCCTTACATTTACGGCACGCCGTC
GTTGGAGTTTCCGGGACTGATCAAGATTGCTGTGCATGGAGGGTACACTTGTGACCCTGACAAGAGGCCGTGGGGTCCTGGGATTTCATCGGATTCCATG
AAGGAATGGATCGAGGGGAGGTTCTCAGGCTTGGTTGATTATGGCGGGCCTGTCGCTACTCAATTGTGCATGTACTCAATGACCCCAGATGGGGATTTTG
TGATTGATTTTCTTGGTGGGGAGTTTGGGAAGGATGTGGTGGTGGGTGGTGGGTTTTCAGGTCATGGGTTCAAGATGGCTCCAGTCGTGGGGAGGATTTT
GGCTGACCTTGCGCTTAGCGGGGAGGCCAAGGGTGTGGACCTGAAACACTTCAGGATACAGAGGTTTCAAGAGAATCCTAAAGGCAACGTGAAAGATTAT
GAAGATCAAGTCTCCAAATCACAAGTAGATGAGTAG
AA sequence
>Potri.018G008700.1 pacid=42800741 polypeptide=Potri.018G008700.1.p locus=Potri.018G008700 ID=Potri.018G008700.1.v4.1 annot-version=v4.1
MEYSSHHFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYCDMVMESSQSWEQAQSEIGYKVYFKAQQFDMGPSDN
KSLLSVISSCERKSLPHQVLDGQQVADRFSGRINIPESWVGVLTEVGGVIKPTKAVSMFQALAFQKGAVLRDNMEVKNIVKDEARGGVNVVVANGEEYWG
KKCVVTAGAWMGKLVKTVSGLELPIQALETTVCYWRIKEGHEAKFAIGSDFPTFASYGEPYIYGTPSLEFPGLIKIAVHGGYTCDPDKRPWGPGISSDSM
KEWIEGRFSGLVDYGGPVATQLCMYSMTPDGDFVIDFLGGEFGKDVVVGGGFSGHGFKMAPVVGRILADLALSGEAKGVDLKHFRIQRFQENPKGNVKDY
EDQVSKSQVDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24580 FAD-dependent oxidoreductase f... Potri.018G008700
[exp]
0 1
AT4G30790 unknown protein Potri.018G103000
[exp]
2.44 0.9235
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.004G024404
[exp]
2.64 0.9454
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Potri.002G224000
[exp]
3.46 0.9020
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Potri.004G024566
[exp]
4.69 0.9238
AT5G50080 AP2_ERF ERF110 ethylene response factor 110 ... Potri.005G195000
[exp]
6.32 0.9163
AT2G14095 unknown protein Potri.002G101500
[exp]
8.48 0.9134
AT1G62300 WRKY ATWRKY6, WRKY6 WRKY family transcription fact... Potri.002G228400
[exp]
10.19 0.9169
AT4G37290 unknown protein Potri.007G049500
[exp]
12.68 0.9124
AT3G24090 glutamine-fructose-6-phosphate... Potri.019G054500
[exp]
12.72 0.8780
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Potri.012G089500
[exp]
13.19 0.8363

Potri.018G008700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.