Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 313 / 9e-102 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G16890 306 / 4e-99 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G15480 303 / 8e-98 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT3G53150 301 / 7e-97 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT4G34131 298 / 4e-96 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G36800 296 / 4e-95 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT5G14860 293 / 7e-94 UDP-Glycosyltransferase superfamily protein (.1) AT3G53160 291 / 3e-93 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36780 291 / 5e-93 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 288 / 7e-92 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009000 [exp] 766 / 0 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272600 [exp] 752 / 0 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 750 / 0 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.005G036100 [exp] 439 / 4e-151 AT2G15490 309 / 3e-100 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 317 / 1e-103 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 314 / 3e-102 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303000 [exp] 311 / 3e-101 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 311 / 5e-101 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 309 / 4e-100 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026927 [exp] 581 / 0 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10020124 [exp] 579 / 0 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10026926 [exp] 572 / 0 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10022220 [exp] 321 / 4e-105 AT2G16890 497 / 4e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022222 [exp] 314 / 3e-102 AT5G14860 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 303 / 1e-97 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 300 / 9e-97 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10016268 [exp] 300 / 1e-96 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 296 / 4e-95 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10014437 [exp] 295 / 3e-94 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.018G008900.1 pacid=42801094 polypeptide=Potri.018G008900.1.p locus=Potri.018G008900 ID=Potri.018G008900.1.v4.1 annot-version=v4.1 ATGCCTTCTCCTTCGTCATCCCATGTTGTTATCTTTCCTTTCATGGCTCAAGGCCATACTCTTCCATTACTCTACCTATCAAAAGCTCTTTCACGTCAAC AAATCATGGTGACCATCATCACCACCCCGTCAAATGCGACATCAATAGCCAAAACCATTGCTAATCACCCCAAAATCAGTCTCGTTGAAATCCCATTCCC CACTATTGATGGCCTACCTAAGGATTGTGAAAACACCTCTCAACTACCTTCAATGGAATTTCACCTTCCTTTTCTCCATGCCACCAAACAACTCCAAAAG CCCTTCGAGCAAGTCCTACAAACCATGTTGGAATCCAAAACCCCTCCTATATGTGTCATTTCAGATTTTTTTCTTGGCTGGACACTTGCTTCATGCCAAG CATTTGGTGTCCCTAGGCTAGTCTTTCATGGCCTGGGTATTCTATCAATGGCCATCATCAAATCTAGTTGGTTTCATGCACCACAACTGGAATCAGTGTC AATGTTTGATCCTTTAGACCTTCCTGGCATGAAACTCCCCTTCACTTTGACTAGAGCAGACTTGCCAGGGTCGACCAACTTACCAGAACATGATGACAAA TTTTACCAGTTCATACAAGAAGTAGGAGAGGCTGATGTAAAGAGTTGGGGAGTTATTGTTAATAGCTTTGAAGAGCTAGAAAAGAGTCACATCCAAGCTT TTGAATCTTTCTACATCAATGGGGCTAAGGCTTGGTGTTTAGGTCCTCTATGTTTGTATGAAAAAATGGGAAGCGATAAATCCACCAACCAAGACCATTC CTGTACTTTAACACAATGGCTGACTGAGCAAGTCACACCAGATTCTGTGATTTATGTTTCATTTGGTACACAAGCTGATGTATCAGATTCCCAGCTTGAT GAAGTGGCTTTTGCCTTGGAGGAGTCAGGATCTCCTTTCTTATGGGTGGTAAGATCAAAGACATGGTCTTTACCTACTGGCTTGGAAGAGAAAATAAAAA ATAGGGGTTTGATTGTAAGAGAATGGGTCAATCAACGCCAAATACTATCTCATCGTGCAATAGGTGGGTTCTTGAGTCATTGTGGTTGGAATTCAGTGCT AGAGAGTGTATCAGCTGGTGTGCCAATTCTTGCTTGGCCAATGATAGCTGAACAATCACTGAATGCTAAATTTATAGTGGATGGACTTGGAGCCGGGCTT AGTGTCGAAGGGGTGCAAAATCAAGTCTCTAAAATTCTTGTTTCAAGGCAAGCTATATGTGAAGGTGTGGAGGAGTTGATGGGAGGATCAAAGGGAAGGA TTGCAAAGGAGAGAGCGCAAGCCTTGGGCAGGGTGGCTGGAAGGGCAGTGCAAAAAGGTGGGTCGTCTCATGACACCCTGAACAAGCTCATTGATCAACT TCGTGTCTCTATGTAG
AA sequence Show only first row Show all	>Potri.018G008900.1 pacid=42801094 polypeptide=Potri.018G008900.1.p locus=Potri.018G008900 ID=Potri.018G008900.1.v4.1 annot-version=v4.1 MPSPSSSHVVIFPFMAQGHTLPLLYLSKALSRQQIMVTIITTPSNATSIAKTIANHPKISLVEIPFPTIDGLPKDCENTSQLPSMEFHLPFLHATKQLQK PFEQVLQTMLESKTPPICVISDFFLGWTLASCQAFGVPRLVFHGLGILSMAIIKSSWFHAPQLESVSMFDPLDLPGMKLPFTLTRADLPGSTNLPEHDDK FYQFIQEVGEADVKSWGVIVNSFEELEKSHIQAFESFYINGAKAWCLGPLCLYEKMGSDKSTNQDHSCTLTQWLTEQVTPDSVIYVSFGTQADVSDSQLD EVAFALEESGSPFLWVVRSKTWSLPTGLEEKIKNRGLIVREWVNQRQILSHRAIGGFLSHCGWNSVLESVSAGVPILAWPMIAEQSLNAKFIVDGLGAGL SVEGVQNQVSKILVSRQAICEGVEELMGGSKGRIAKERAQALGRVAGRAVQKGGSSHDTLNKLIDQLRVSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G008900 [exp]	0	1
AT3G42180			Exostosin family protein (.1.3...		Potri.018G124832 [exp]	2.00	0.9693
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.007G090100 [exp]	2.44	0.9748
					Potri.001G388600 [exp]	2.82	0.9579	PPO5
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G030400 [exp]	3.00	0.9697
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.009G022400 [exp]	3.87	0.9673
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.008G193400 [exp]	4.47	0.9519
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.003G200700 [exp]	5.19	0.9551	ANN1.1
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	7.00	0.9620
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G102901 [exp]	7.61	0.9322
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	8.12	0.9645

Compare expression of checked genes

Potri.018G008900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.