Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SRZ.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31580 174 / 2e-55 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) AT2G24590 164 / 1e-51 RSZ22a, At-RSZ22a RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G23860 147 / 1e-44 SRZ21, SRZ-21, RSZP21, RSZ21, At-RSZ21 RS-containing zinc finger protein 21 (.1.2.3.4) AT1G02840 71 / 1e-14 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 64 / 7e-13 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37340 60 / 9e-11 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT1G09140 59 / 2e-10 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G53500 59 / 2e-10 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G49430 57 / 6e-10 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT1G60650 56 / 2e-09 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272400 [exp] 224 / 5e-75 AT2G24590 152 / 4e-47 RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.019G050600 [exp] 153 / 2e-47 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4) Potri.014G129900 [exp] 62 / 2e-11 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.016G081700 [exp] 62 / 2e-11 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 61 / 3e-11 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.005G024600 [exp] 61 / 4e-11 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.013G015500 [exp] 61 / 4e-11 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.002G205025 [exp] 61 / 5e-11 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G004600 [exp] 58 / 3e-10 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026925 [exp] 163 / 3e-51 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10020123 [exp] 162 / 4e-51 AT4G31580 188 / 2e-61 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10030631 [exp] 154 / 3e-47 AT4G31580 164 / 9e-51 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10030858 [exp] 155 / 6e-47 AT4G31580 166 / 9e-51 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10012994 [exp] 153 / 2e-46 AT4G31580 162 / 3e-50 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10029171 [exp] 154 / 4e-45 AT4G31580 160 / 5e-47 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10020656 [exp] 66 / 1e-12 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 65 / 3e-12 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 63 / 5e-12 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 64 / 7e-12 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.018G009100.1 pacid=42800934 polypeptide=Potri.018G009100.1.p locus=Potri.018G009100 ID=Potri.018G009100.1.v4.1 annot-version=v4.1 ATGTCTCGGGTTTATGTCGGTAACTTGGACCCAAGAGTCTCTGAACGTGAACTTGAAGATGAGTTTCGACGATTCGGTGTTATAAGAAGTGTGTGGGTTG CAAGGAGGCCGCCAGGTTATGCTTTTATTGATTTCGATGATAAAAGGGATGCTCAGGATGCTATTCATGAGTTGGATGGAAAAAATGGCTGGAGAGTTGA GCTTTCTCACAACTCCAGAGGTGGAGGTGGGGGTGGGGGTGGTGGTGGCGGTGGCCGTGGAGGGGGTCGTGGTCGTTCTGGTGGTTCTGACTTGAAGTGT TATGAGTGTGGTGAGGCTGGTCATTTCGCTCGTGAGTGCCGCTTGCGTGTTGGTTCAGGAGGTGGAGGTGGAGGTGGAGGTGCAGGAAGACGTCGTAGCC GCAGCCCTAGATATCGCAGGAGCCCAAGCTATGGTCGAAGGAGCAGGAGCCACAGCCCTCAAGGACGATCCCCCAAGCGCCGCAGTCTATCACCTCGTGG GCGCAGCTATAGCAGGTCACCACAGTACCGTGGACGTGAAGAGCTCCCATATACCAATGGAAATGGCACCAGGGATCGTCGCCGAAGCAGGAGTTAA
AA sequence Show only first row Show all	>Potri.018G009100.1 pacid=42800934 polypeptide=Potri.018G009100.1.p locus=Potri.018G009100 ID=Potri.018G009100.1.v4.1 annot-version=v4.1 MSRVYVGNLDPRVSERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAQDAIHELDGKNGWRVELSHNSRGGGGGGGGGGGGRGGGRGRSGGSDLKC YECGEAGHFARECRLRVGSGGGGGGGGAGRRRSRSPRYRRSPSYGRRSRSHSPQGRSPKRRSLSPRGRSYSRSPQYRGREELPYTNGNGTRDRRRSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Potri.018G009100 [exp]	0	1	SRZ.4
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	3.16	0.8681
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	6.92	0.8470
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	17.88	0.8268
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	20.78	0.8374
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	25.09	0.8336
					Potri.015G036450 [exp]	29.24	0.8343
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007100 [exp]	29.39	0.7689
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	34.20	0.7914	Pt-CDC48.1
AT5G44010			unknown protein		Potri.014G192200 [exp]	35.69	0.8301
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.004G095000 [exp]	39.57	0.7487

Compare expression of checked genes

Potri.018G009100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.