Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCNGC14.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24610 938 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 899 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G14870 793 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 759 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 712 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT5G57940 674 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 670 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 665 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 665 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G53130 664 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 961 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 786 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 761 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 731 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 703 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 667 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.015G019100 [exp] 663 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 657 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 650 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015510 [exp] 953 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 952 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 949 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 884 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 862 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 832 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 821 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10039415 [exp] 783 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 780 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10002363 [exp] 766 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.018G009200.4 pacid=42800984 polypeptide=Potri.018G009200.4.p locus=Potri.018G009200 ID=Potri.018G009200.4.v4.1 annot-version=v4.1 ATGGATACTGATTTGAATTTAGGAATCACAGTGACATGTTTTAGAACATTTGCTGATTTATTTTACATAATTCATATTGTAATAAAGTTTAGGACAGCTT ATGTCTCACCTAGTTCAAGAGTTTTTGGGAGAGGTGAACTTGTTATGGATCCTGAGTTGATTGCAAGGAGATATTTGAGATCAGATTTCTTCATAGATCT TATTGCAGCATTACCTCTTCCTCAGATTGTGATATGGTTTATAATACCAGCAATTAGAAGCTCTCATGCTGATCATACCAACAATGCCATAGTACTGATT GTTCTGCTCCAGTATATTCCCAGATTATATCTGATTTTTCCATTGAGTTCTGAGATCATTAAAGCTACTGGAGTAGTCACAAAGACTGCCTGGGCTGGGG CTGCATATAATCTCCTGCTATACATGTTGGCTAGTCATGTCTTGGGGGCATCCTGGTATTTGTTGTCGATTGAGCGCCATGCAACATGCTGGAAATCTGC TTGCAAACATGAATTGAGCCCTATACCATGCAAGCCTCGTTACTTGGATTGTGGTACTTTGAACTTTGCTGATCGCAAGTCATGGGAAAACACTACTGTT GTATTTTCAAGATGTAATCCATCCAACAAAACCTTTTTCGATTACGGCATATTCGCAAATGCATTGAACCAGAATGTACTTTCCTCTGAGTTTCTTGAAA AGTATTTCTACTGTCTTTGGTGGGGTTTGCAGAACTTGAGTTCCTATGGCCAGAGTTTGTCAACAAGCACATTTATTGGGGAAACTGCATTTGCCATACT CATTGCCATCTTGGGCCTGGTTTTGTTTTCCCATTTGATAGGAAATATGCAGACATACTTGCAATCTATCACCGTGAGGCTTGAGGAGTGGAGGCTCAAG CGACGAGACACAGAGGAGTGGATGAGACATCGTCAACTCCCTCAAAGTCTACGAGAACGTGTCAGACGGTTTGTTCAATACAAGTGGCTTGCAACTAGAG GGGTTGATGGAGAATCAATCTTGCGTGCATTACCTACAGATCTTCGTCGAGACATCCAGCGCCACCTATGCCTGGACCTTGTTAGACGAGTTCCTTTTTT CTCACAGATGGATGGTCAGCTACTTGATGCAATATGTGAGCGCTTAGTGTCCTCCTTGAGTACTCAAGGAACCTATATAGTTCGAGAAGGTGATCCAGTC ACAGAGATGCTTTTTATTATCAGGGGAAAGCTAGAGAGCTCAACTACAAATGGAGGACGAACTGGTTTCTTCAATTCAATTATTTTGAGACCTGGCGACT TTTGCGGTGAGGAGCTGCTTGCCTGGGCATTGCTCCCAAAATCTACTCTCAACTTACCATCTTCCACAAGGACAGTGAGAGCTCTAGAAGAAGTGGAAGC ATTTGCATTGCAAGCCGAAGACCTCAAGTTCGTCGCCAATCAGTTTAGACGTCTCCATAGCAAGAAGCTACAACATACCTTCCGTTTCTACTCTTACCAT TGGAGAACATGGGCTACCTGCTTCATTCAGGCTGCTTGGCGTCGGCACAAGAAGAGAATGATGGCAAAGAGCTTGAGCATGTCAGAATCCTTCTCACTTT CTGTTGATGGGCAAACAGCTGATGACGAAACAACACAAGAGGAGGCTGAACCTAGTTTTGCATCTTCAACTTCTTCTCAAGCAAAACAGCACCTTGGTGT CACAATACTGGCTTCAAGATTTGCTGCAAACACAAGAAGAGGGGCTCAGAAAGTCAAGAAAGTTGACATGCCCAGGTTGCAAAAACCTGAAGAGCCAGAT TTTTCAACAGAACCAGACGATGACTAG
AA sequence Show only first row Show all	>Potri.018G009200.4 pacid=42800984 polypeptide=Potri.018G009200.4.p locus=Potri.018G009200 ID=Potri.018G009200.4.v4.1 annot-version=v4.1 MDTDLNLGITVTCFRTFADLFYIIHIVIKFRTAYVSPSSRVFGRGELVMDPELIARRYLRSDFFIDLIAALPLPQIVIWFIIPAIRSSHADHTNNAIVLI VLLQYIPRLYLIFPLSSEIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSACKHELSPIPCKPRYLDCGTLNFADRKSWENTTV VFSRCNPSNKTFFDYGIFANALNQNVLSSEFLEKYFYCLWWGLQNLSSYGQSLSTSTFIGETAFAILIAILGLVLFSHLIGNMQTYLQSITVRLEEWRLK RRDTEEWMRHRQLPQSLRERVRRFVQYKWLATRGVDGESILRALPTDLRRDIQRHLCLDLVRRVPFFSQMDGQLLDAICERLVSSLSTQGTYIVREGDPV TEMLFIIRGKLESSTTNGGRTGFFNSIILRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALEEVEAFALQAEDLKFVANQFRRLHSKKLQHTFRFYSYH WRTWATCFIQAAWRRHKKRMMAKSLSMSESFSLSVDGQTADDETTQEEAEPSFASSTSSQAKQHLGVTILASRFAANTRRGAQKVKKVDMPRLQKPEEPD FSTEPDDD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	0	1	Pt-ATCNGC14.1
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	2.00	0.9014
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	4.24	0.8708	Pt-MSJ1.3
					Potri.005G137450 [exp]	4.89	0.8454
AT5G53500			Transducin/WD40 repeat-like su...		Potri.002G174100 [exp]	5.29	0.8860
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Potri.014G180100 [exp]	9.48	0.8534	MRP9.1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.014G134900 [exp]	9.59	0.8350	NHX1.2
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	11.31	0.8667
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	13.41	0.8642
AT1G72660			P-loop containing nucleoside t...		Potri.001G170300 [exp]	15.29	0.8207	Pt-DRG1.1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.008G099100 [exp]	16.91	0.8490	Pt-ACT11.13

Compare expression of checked genes

Potri.018G009200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.