Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31590 1077 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 1041 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT4G07960 842 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT3G28180 837 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT3G07330 766 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT5G03760 393 / 2e-129 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G22740 390 / 2e-128 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT2G35650 380 / 4e-124 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT1G23480 379 / 9e-124 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT1G24070 379 / 2e-123 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270900 [exp] 1213 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.005G146900 [exp] 850 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G114200 [exp] 849 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G248400 [exp] 766 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 709 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 402 / 8e-133 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 395 / 4e-130 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.009G149700 [exp] 394 / 7e-130 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.014G190701 [exp] 382 / 3e-129 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026923 [exp] 1079 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 1004 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10039440 [exp] 871 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10039475 [exp] 868 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10007715 [exp] 778 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 763 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 755 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10038217 [exp] 681 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 395 / 4e-130 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 373 / 2e-121 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.018G009300.1 pacid=42800879 polypeptide=Potri.018G009300.1.p locus=Potri.018G009300 ID=Potri.018G009300.1.v4.1 annot-version=v4.1 ATGGCTCCAGGATTGGATTTTTCAGATTGGTGGGGAAAAGACAGAAAGAAGGGATCACCTGTGGTAGTGAAAATGGAGAATCCTAACTATTCTGTCGTGG AAATCAATGGTCCAGATTCTGCATTTAGGCCAGTTGAGAAGAGCAGAGGCAAGAATGCTAAGCAAGTCACATGGGTTTTGCTCCTCAAGGCTCATAGAGC TGTTGGTTGTGTTGCTTGGTTAGCTACTGTCTTTTGGGCCTTGCTAGGGACTATCAAGAAGAGGTTGATCTTTAGACAAGGTGTTGCAGTGGCTACCGAG AAGTTAGGCAAAGGGAAATTGGTACTTAAAATCATTAGAGTGTTTTTAGTGACCTCTTTGGCAATTTTGGCTTTTGAAGTGCTTGCTTATTTGAAAGGTT GGCGTTATTTTGAGAGTGCTAATTTGCATATCCCAAGTACCTTGGATTTGCAAGGCTTGCTTCACATGGTTTTTGTTGCTTGGTTAACATTCAGGGCTGA TTACATTGCGCCAGTAATTCAAGTTCTCTCTCAATTCTGTGTTGTTTTATTCCTTATTCAATCTGTAGATCGTTTGGTACTTTGTTTGGGTTGCTTTTGG ATTAAATACAAGAAGATTAAGCCAAGGATTGATGGGGATCCATTCAAGTCAGATGATGTTGAGGCACCAGGCTATGAGTATCCCATGGTTCTTGTACAAA TCCCAATGTGTAACGAAAGAGAGGTATATGAGCAGTCTATCTCTGCAGTTTGCCAAATGGATTGGCCAAAGGATCGCATACTGATTCAAGTTCTTGATGA TTCTAATGATGAGAGCATCCAATGGTTAATTAAGGCAGAGGTTACTAAGTGGAACCAAAAGGGTGTCAATATAATCTATAGGCATCGCTTGATTAGAACA GGTTACAAAGCTGGAAATCTCAAGTCTGCAATGAGCTGTGATTATGTAAAGGATTATGATTTTGTTGCGATTTTTGATGCTGATTTCCAGCCCAATCCAG ACTTCCTTAAGCTGACGGTGCCGCATTTCAAGAACAATCCTGAACTAGGGCTGGTTCAAGCCAGATGGGCATTTGTGAACAAGGATGAGAATTTATTGAC TCGTCTCCAAAACATCAATTTGTGTTTTCACTTTGAGGTTGAACAGCAAGTTAATGGAGCATTCCTAAATTTCTTTGGTTTCAATGGAACTGCTGGTGTT TGGAGAATCAAAGCCCTTGAAGAGTCTGGCGGATGGCTTGAAAGGACAACTGTAGAGGACATGGACATAGCTGTCCGTGCACATCTTAATGGTTGGAAAT TCATCTTCCTTAATGACGTTAAGGTCCTCTGTGAAGTTCCTGAGTCCTATGAAGCTTACAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACT TTTCCGCTTGTGTCTTCCAGCAATTATAACCTCTAAGATAGCATTATGGAAGAAAGCAAACTTAATATTCCTATTTTTTCTATTGAGAAAACTTATCCTT CCTTTCTATTCCTTCACACTGTTCTGCATAATTCTTCCTTTAACAATGTTTGTCCCCGAGGCTGAGCTTCCTATGTGGGTTATTTGCTATGTGCCTGTCT TGATGTCATTCCTGAACATTCTTCCTGCCCCAAAATCCTTCCCTTTCATTGTTCCTTACCTGCTCTTTGAAAACACCATGTCAGTTACCAAATTCAATGC CATGGTTTCTGGTTTATTCCAGTTGGGTAGCTCTTATGAGTGGGTTGTCACCAAGAAGGCTGGTAGGTCATCAGAATCTGACTTGCTGGCTGCTGCTGAG AGGGACTCAAAGACAATGCAACCACAGATATGCAGAGGAGCTTCGGAGACCGAGCTTGAACTGTTAAACCAATTGAAGGAACAAAAAGAAACAGCTCCTA AACCCGTAAAGAAAGTGAACAAGATTTACAGGAAAGAGCTTGCTCTAGCTTTCCTCCTACTCACAGCTTCTGTCAGGAGCTTGTTATCAGCCCAGGGAGT CCACTTTTACTTCCTTCTCTTCCAAGGTGTGACCTTCCTTGTTGTTGGTCTTGATCTGATTGGAGAGCAAATAAGCTAA
AA sequence Show only first row Show all	>Potri.018G009300.1 pacid=42800879 polypeptide=Potri.018G009300.1.p locus=Potri.018G009300 ID=Potri.018G009300.1.v4.1 annot-version=v4.1 MAPGLDFSDWWGKDRKKGSPVVVKMENPNYSVVEINGPDSAFRPVEKSRGKNAKQVTWVLLLKAHRAVGCVAWLATVFWALLGTIKKRLIFRQGVAVATE KLGKGKLVLKIIRVFLVTSLAILAFEVLAYLKGWRYFESANLHIPSTLDLQGLLHMVFVAWLTFRADYIAPVIQVLSQFCVVLFLIQSVDRLVLCLGCFW IKYKKIKPRIDGDPFKSDDVEAPGYEYPMVLVQIPMCNEREVYEQSISAVCQMDWPKDRILIQVLDDSNDESIQWLIKAEVTKWNQKGVNIIYRHRLIRT GYKAGNLKSAMSCDYVKDYDFVAIFDADFQPNPDFLKLTVPHFKNNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGAFLNFFGFNGTAGV WRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIITSKIALWKKANLIFLFFLLRKLIL PFYSFTLFCIILPLTMFVPEAELPMWVICYVPVLMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRSSESDLLAAAE RDSKTMQPQICRGASETELELLNQLKEQKETAPKPVKKVNKIYRKELALAFLLLTASVRSLLSAQGVHFYFLLFQGVTFLVVGLDLIGEQIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.018G009300 [exp]	0	1
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Potri.003G076900 [exp]	2.00	0.9427
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Potri.004G135100 [exp]	3.74	0.9195
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	4.00	0.9239
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Potri.016G080400 [exp]	4.47	0.9301
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.001G374200 [exp]	6.00	0.9307
AT5G67070		RALFL34	ralf-like 34 (.1)		Potri.007G044700 [exp]	7.21	0.9057
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.016G090500 [exp]	7.61	0.8854
AT3G52870			IQ calmodulin-binding motif fa...		Potri.016G034100 [exp]	9.16	0.8756
AT1G65295			unknown protein		Potri.019G053100 [exp]	13.07	0.8394
AT1G29450			SAUR-like auxin-responsive pro...		Potri.009G141150 [exp]	13.26	0.9345

Compare expression of checked genes

Potri.018G009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.