Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24640 686 / 0 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 662 / 0 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 409 / 3e-130 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 358 / 6e-113 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 360 / 3e-111 UBP16 ubiquitin-specific protease 16 (.1) AT5G57990 234 / 6e-66 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 219 / 8e-62 UBP25 ubiquitin-specific protease 25 (.1) AT5G46740 182 / 3e-48 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 167 / 2e-43 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 137 / 5e-35 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270600 [exp] 1062 / 0 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 404 / 1e-129 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 404 / 3e-128 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 405 / 5e-127 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 400 / 5e-125 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G107500 [exp] 247 / 4e-70 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 245 / 2e-69 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.011G112800 [exp] 214 / 3e-60 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 213 / 6e-60 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026918 [exp] 811 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 803 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 412 / 1e-130 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10035825 [exp] 252 / 5e-72 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 249 / 5e-71 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10015893 [exp] 228 / 1e-67 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10013726 [exp] 226 / 3e-64 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 224 / 7e-64 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10043126 [exp] 212 / 2e-58 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 211 / 5e-57 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G009500.1 pacid=42802103 polypeptide=Potri.018G009500.1.p locus=Potri.018G009500 ID=Potri.018G009500.1.v4.1 annot-version=v4.1 ATGCATGTCGGTGGAATAACAGTGGATCTGAATTGGTTACTACAATTTATTTTCACTGTCTTTATAATAGGTTTAGGTTTGTTACACCTCGTTAAGAATA CGGCGTCGAAGTATTTCGAAGTCGACGCCAATTTCGAAGCGGCTGAGAGTAACCACACTGTTATTGATCCAAGTATTGTTAACCAGGCAATGGAAGCTGA AGAGGATTCTCTTCGTTGTGTTAATTGTGGCATTTCGGGGTCTAAAACGTGTTCTCGTTGCAAATCTGTGAGATATTGCTCACAGGGATGTCAAGAAGCA CACTGGAAAGCAGGCCATAAGTTACAATGCAAGGATTTCAAAGCAAACTCATCACAAACAGCAAAATCAAACTTCGGTTTTAAACCATCTGGTGGTGGGA GCAAAAGTTTTTCTAGCATCGCACTTGTTCCTGCCAGTGGAGGTTCTAACTCTAAGCCTACAAAGAAGCCAGGAAAGGTTCTTTTCCCGTATGATGAATT CATCAAACTTTACAACTCAGACAAACCCAGATTCCCTCCCTGTGGGCTCTTAAATTGTGGAAACAGTTGCTTTGCCAATGTGGTTCTGCAATGTCTTACT TACACTAGGCCACTTGTTGCCTACTTGTTGGAGAAAGGTCATCAAACAGAATGTAGACATAATGATTGGTGTTTTCTTTGTGAATTTCAATCCCATGTTG AAAGAGCAAGCCAAAGTGCACTTCCTTTTTCACCGATGAATATTCTTTCTCGGTTACGCAATATTGGTGGTAATCTTGGCTATGGAAGACAGGAGGATGC TCATGAGTTCATGAGGTTTGCTATTGATACAATGCAATCAGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTTGAACCTGCCTCCCAAGAGACTACA ATAATTCAACACATATTTGGGGGTCGCCTCCAGTCTCAGGTGATATGTACAAAGTGCAATAAGATTTCAAATCAGTTTGAGAACATGATGGATTTAACTG TTGAGATTCATGGTGATGCTGAATCCTTGGAGGAATGCCTCAATCAATTCACAGACAAAGAATGGCTCCATGGAGAAAATATGTACAAATGTGATGGGTG CAATGACTATGTCAAGGCATGGAAGCGTCTTACCATTCAACGAGCTCCGAATGTTCTTACAATCGCGTTAAAGAGATTCCAGAGTGGGAGGTTTGGTAAA CTTAACAAAAGGGTAACTTTTCCTGAGACTTTAGACCTGAGCCCCTACATGAGTGAAAAAGGAGATGGCGCAGATGTGTACAAGCTTTATGCAGTTGTTG TCCATGTTGACATGCTAAATGCATCATTTTTTGGTCATTACATCTGCTACACCAAGGATTTCCATGGAAACTGGCACAGAATTGATGACTCTAAGGTTTC TAGTGTTGAATTGGACGAGGTGCTTTCTCAGGGAGCCTATATGCTTTTATACAGCAGGGTTTCTGTTCGACCATCATGTCTCAGAACCATTGAGCCCTCA AAGGAGCAGCAATCAATCGTGAAAGTAGAATTAGACTCCTGCACAGAGAAACCAGCTGGACACCTTTCACCAATGGAGTCAACGGATGCCACAAGTTCTG GGTTCCTAGCACCCGCACCTGAAAGTAGAAATTCTGAATTTGGAAGTGCATGTCATGAGGATGCTGTGGTAAATTTTGAGTCAAGCACAGCAGTTTCAAA GGGTGTTTCATCCTGTGAAAACGAGTCACCATCTAAAGCTGACATGAAAGACGCAGAAGATTCAGGGGTTAATCATAATTCTGAGTTATCTTCATCTGCT ATGGAGGAGGATCCTAGGGACATACCAGTTGCTTTGAGTTCTGGGATTATTCATGAAGTTCCAGAGGATATGAATGGAATTGATTCCAGCTCCAGTTCCT TGATTCCAGTGGGGGTTTCTGACTTAAAGAAGGATTCCTCAACTGCACTTGATTCAGAAGCTGTTGTGATAGAGCATTCCTTGGACCATTCAGATACAGT TATGTACGAATCAGATTCTGCTGTTGCAAAGGATATCAAAGTAAATGGCAGTATTCATTCATTCTCGAGCGAAGAGATTTCAACAAAACCTAATAGTTTG AAACGTCAGCCACCTTTCCATGATTCGGATGGCGAGGACACAAATGGAGCTAAAAGAGCAGAAACAGTAGATAGTTGTTGA
AA sequence Show only first row Show all	>Potri.018G009500.1 pacid=42802103 polypeptide=Potri.018G009500.1.p locus=Potri.018G009500 ID=Potri.018G009500.1.v4.1 annot-version=v4.1 MHVGGITVDLNWLLQFIFTVFIIGLGLLHLVKNTASKYFEVDANFEAAESNHTVIDPSIVNQAMEAEEDSLRCVNCGISGSKTCSRCKSVRYCSQGCQEA HWKAGHKLQCKDFKANSSQTAKSNFGFKPSGGGSKSFSSIALVPASGGSNSKPTKKPGKVLFPYDEFIKLYNSDKPRFPPCGLLNCGNSCFANVVLQCLT YTRPLVAYLLEKGHQTECRHNDWCFLCEFQSHVERASQSALPFSPMNILSRLRNIGGNLGYGRQEDAHEFMRFAIDTMQSVCLDEFGGEKAVEPASQETT IIQHIFGGRLQSQVICTKCNKISNQFENMMDLTVEIHGDAESLEECLNQFTDKEWLHGENMYKCDGCNDYVKAWKRLTIQRAPNVLTIALKRFQSGRFGK LNKRVTFPETLDLSPYMSEKGDGADVYKLYAVVVHVDMLNASFFGHYICYTKDFHGNWHRIDDSKVSSVELDEVLSQGAYMLLYSRVSVRPSCLRTIEPS KEQQSIVKVELDSCTEKPAGHLSPMESTDATSSGFLAPAPESRNSEFGSACHEDAVVNFESSTAVSKGVSSCENESPSKADMKDAEDSGVNHNSELSSSA MEEDPRDIPVALSSGIIHEVPEDMNGIDSSSSSLIPVGVSDLKKDSSTALDSEAVVIEHSLDHSDTVMYESDSAVAKDIKVNGSIHSFSSEEISTKPNSL KRQPPFHDSDGEDTNGAKRAETVDSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.018G009500 [exp]	0	1
					Potri.008G195401 [exp]	1.41	0.9133
					Potri.008G176201 [exp]	2.82	0.8783
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150100 [exp]	2.82	0.8654
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	3.46	0.8410
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038100 [exp]	4.79	0.8210
AT2G34580			unknown protein		Potri.004G132600 [exp]	5.47	0.8612
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G056600 [exp]	8.94	0.8461
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	9.48	0.8524
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.001G108100 [exp]	10.58	0.8311	Pt-HSF6.1
					Potri.009G092750 [exp]	10.90	0.8518

Compare expression of checked genes

Potri.018G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.