Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10720 708 / 0 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 163 / 9e-41 AHK3 histidine kinase 3 (.1) AT5G35750 148 / 6e-36 AHK2 histidine kinase 2 (.1) AT2G01830 144 / 9e-35 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G10680 122 / 6e-31 calmodulin-binding protein-related (.1) AT2G17820 112 / 5e-25 AHK1, ATHK1 histidine kinase 1 (.1) AT2G40940 96 / 5e-20 ERS1 ethylene response sensor 1 (.1) AT1G66340 96 / 8e-20 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 91 / 3e-18 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT5G26594 64 / 1e-11 ARR24 response regulator 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270500 [exp] 1766 / 0 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.014G164700 [exp] 167 / 7e-42 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 156 / 1e-38 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G057400 [exp] 154 / 8e-38 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 153 / 9e-38 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 149 / 1e-36 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.003G032300 [exp] 116 / 2e-26 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.005G111700 [exp] 113 / 4e-25 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.002G201500 [exp] 109 / 3e-24 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026917 [exp] 1307 / 0 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020115 [exp] 1056 / 0 AT5G10720 853 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020114 [exp] 191 / 2e-56 AT5G10720 177 / 2e-52 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10012325 [exp] 170 / 7e-43 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10013250 [exp] 157 / 5e-39 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 157 / 5e-39 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10006370 [exp] 155 / 3e-38 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10003686 [exp] 152 / 3e-37 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 151 / 5e-37 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 151 / 5e-37 AT1G27320 1094 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.018G011400.2 pacid=42802107 polypeptide=Potri.018G011400.2.p locus=Potri.018G011400 ID=Potri.018G011400.2.v4.1 annot-version=v4.1 ATGGTCAGCGAAATGGAGAACGAACAAATGGAGGATATGGACATTGAAGCCCTCCCTTCAATGTGGCCTGAAGATATTGATAGTTCAAAACCATATGTAG AGAAGCCGGTAGGGGATCAAGATATGTTAGAGGAGGTTACAATAGTTGAGGAGCCAACTATAGTTGATTTCCACCATCTCGTCGAGCTGACCAATTACAC TGATAGAGGCTCTTCTCAGTTGACACATCTTGTTCAACATTGGGAATACAAGCATGCAAATGCAGTCCGCCTTCTCAGAGAAGAGCTTGACATCTTAAGC AAACAAAGGGAGGAAGTTGAGCTCAAGAAATTGGAGATCTTGGAGGATTTTCGGTTTGAGGAAGAAAGATACAGTGGCGATAAACGACCGATTTCTATAT TGGATGAAATAATTGATTTATATCAAGATATTCCTCGGAGAAAACGTGATATCATTGTTCAAAGCAAGAAAGTAAACATAGATGCCGAATTCGACACTGT TGCATACTGGAAACAACGAGCAAAGGATTTAGAGAAATTGTTGGAGGCCAGTGTCCACAGAGAGCAGTTACTGATGGAGAAGTTACAGGAAAGCTTACAG AACTTGGAAAAGCAATCCTCACCAGTTGAGGAGTTGACACAGATTCTGAAAAGGGCTGATAATTTCTTACATTTTGTGCTTCAAAATGCTCCTGTTGTTA TAGGCCATCAGGATAAGGATTTAAGATATCGCTTTATCTACAATCAGTTTCCGCGTTTGCAAGAGGAGGAAATTTTAGGAAAAACAGATGTCGAAATTTT TTCAGGCTCAGGAGTGAAGGAATCTCAAGATTTTAAGAAAGAAGTTTTGGATAAAGGATTGCCTGCAAAGAGGGAAATCACATTTGAGACAGAATTATTT GGTTCAAAGACATTTTTGATTTATGTAGAGCCAGTGTTTAGCAAGTCCGGGGAGACGATCGGTATAAACTATATGGGAATGGATGTAACTGATCAGGTGA GGAAAAGAGAGAAAATGGCACAGCTTCGAGAGCAGATAGCAGTACAGAAAGCCAAGGAAACAGAACTTAACAAAACAATCCATATAACAGAGGAAACAAT GCGTGCGAAACAAATGCTAGCGACCATGTCTCATGAAATAAGATCTCCACTTTCTGGAGTTGTCAGCATGGCTGAGATTCTTTCCACTACAAACCTTGAT CGCGAGCAAAGACAATTATTGAATGTGATGATATCTTCAGGAGACTTGGTTCTTCAACTTATAAATGATATACTCGACCTTTCCAAGGTTGAGTCAGGTG TTATGAAGTTGGAAGCAACAAAGTTCCGACCAAGAGAGGTAGTAAAGCATGTATTGCAGACTGCTGCAGCATCATTGCAAAAGATTCTGACCTTGGAAGG ACGTGTAGCCGATGATGTTCCCATTGAGGTCATTGGAGATGTTCTCAGGATCCGGCAAATCCTCACCAACCTGATCACCAATGCAATCAAGTTTACTCAT GAAGGGAAAGTAGGGATAAACCTTTATGTCGTATCGGATCCATGTTATGGAAAAGCTGAAGGAAACCATCAGAAGTCATCTGGAGATCAGTCAACCACAA TTGAGATAAAAGAAGACAAGCCTAAGCTGTCATCTCAAAATTGCAGTGATAGAAAAGGTTTCCACAGTAAAAAATACAGTGAAGGTCCATATCCAGATCA TTTGCCTAGTGATGAACCTCAAACCCCAGTTAAGAATGGAAACACAACGGATGGGGATGAAGGGGAGGAACCTCAAGTACCTGGAACAACAGTGTGGCTT TGCTGTGATGTTTATGATACTGGAATTGGAATCCCAGAAAATGCTCTGCCTACTCTATTCAGAAAATACATGCAAGTTAGCGCAGATCATGCTCGAAAAT ATGGCGGGACAGGGCTTGGCCTTGCTATATGCAAACAGCTGGTTGAGCTGATGGGAGGTCGTCTCACTGTGTCTAGCAAAGTGAAATCTGGATCTACATT TACCTTTGTGCTACCGTACAAGGTATCATCAACCTGTGATTCTTCTGATGATCCTGATGATCTATCAGAGATGGCTGATCATGAAGCTCCACTAGAGGAT GAAACTGCCGGCTTCTTTCAGTTCCAACCACGTACTTTGGGCTCTCTATTCTCTTCTAATGGATCCACCAGGACCCAAAAATTATTGCCACATAGTATCG GTTTTACTAAATCCCCTAAAATTAATGGAATCTCAGAGGATTCTTGCTCATTTCCTTCTGGTAACGTTAGACTGAAAGAGACGACTTGTGTTGAGGATGC CTGTTCTATGGTTGAAGTCGCTGAGACCTTATCTGAACCTGAAAGCTCATTTAGTCACAGCCCTGAACGTGACTACGAGAATGTAGTTTGTAGAAGTCAA CAAAGTCAAGACGACACAAACTGTAAAATCCCGAATGGCACTACAAATTGCAATAATCACACAGAATCAAGCAGAGAAGTGAGCTTAAGGGCAAATACAG CCGAACCACCAGGATCGTGTCAGGAAGAAGAAAAATCTGTCATTAATTCTCAGTGCACTTCTAGCAGCATCCCACAAAAACCAGAATCAAAACCAAAGCC AAAGATTCTTCTAGTAGAAGATAATAAGATCAATGTAATGGTGACGAAATCAATGATGAAGCAGTTAGGCCATACCATGGATGTTGTGAATAATGGAGTT GAAGCTGTGCGTGCAGTTCAGTCCTGTTGTTATGATCTAGTTTTGATGGACGTCTGCATGCCGGTAATGAATGGCCTTCAAGCTACACAATTGATTCGTT CTTTTGAAGAAACTGGCAATTGGGATGCTGCTGCTAAGGCTGGAATAGAGCCTTCAGCTTCATTACAAGATAGTCAGAGTTCTATTCATTATGATAAGAG GATGCCTATAATTGCGATGACAGCAAATGCATTATCAGAGAGTGCAGAGGAATGTTATGCAAATGGTATGGACTCATTTGTTTCAAAGCCTGTGACTTTT CAAAAACTAAAAGAGTGCCTAGAACAATATTTACCATGA
AA sequence Show only first row Show all	>Potri.018G011400.2 pacid=42802107 polypeptide=Potri.018G011400.2.p locus=Potri.018G011400 ID=Potri.018G011400.2.v4.1 annot-version=v4.1 MVSEMENEQMEDMDIEALPSMWPEDIDSSKPYVEKPVGDQDMLEEVTIVEEPTIVDFHHLVELTNYTDRGSSQLTHLVQHWEYKHANAVRLLREELDILS KQREEVELKKLEILEDFRFEEERYSGDKRPISILDEIIDLYQDIPRRKRDIIVQSKKVNIDAEFDTVAYWKQRAKDLEKLLEASVHREQLLMEKLQESLQ NLEKQSSPVEELTQILKRADNFLHFVLQNAPVVIGHQDKDLRYRFIYNQFPRLQEEEILGKTDVEIFSGSGVKESQDFKKEVLDKGLPAKREITFETELF GSKTFLIYVEPVFSKSGETIGINYMGMDVTDQVRKREKMAQLREQIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTNLD REQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGRVADDVPIEVIGDVLRIRQILTNLITNAIKFTH EGKVGINLYVVSDPCYGKAEGNHQKSSGDQSTTIEIKEDKPKLSSQNCSDRKGFHSKKYSEGPYPDHLPSDEPQTPVKNGNTTDGDEGEEPQVPGTTVWL CCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKVKSGSTFTFVLPYKVSSTCDSSDDPDDLSEMADHEAPLED ETAGFFQFQPRTLGSLFSSNGSTRTQKLLPHSIGFTKSPKINGISEDSCSFPSGNVRLKETTCVEDACSMVEVAETLSEPESSFSHSPERDYENVVCRSQ QSQDDTNCKIPNGTTNCNNHTESSREVSLRANTAEPPGSCQEEEKSVINSQCTSSSIPQKPESKPKPKILLVEDNKINVMVTKSMMKQLGHTMDVVNNGV EAVRAVQSCCYDLVLMDVCMPVMNGLQATQLIRSFEETGNWDAAAKAGIEPSASLQDSQSSIHYDKRMPIIAMTANALSESAEECYANGMDSFVSKPVTF QKLKECLEQYLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.018G011400 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159100 [exp]	1.73	0.8610
AT4G08250	GRAS		GRAS family transcription fact...		Potri.002G086100 [exp]	10.58	0.8669
					Potri.004G047932 [exp]	11.91	0.7861
AT2G23690			unknown protein		Potri.009G110600 [exp]	27.38	0.7598
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	31.04	0.8435
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	37.41	0.8234
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	37.61	0.8386
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035400 [exp]	48.18	0.8239
					Potri.012G125400 [exp]	49.63	0.8197
AT4G22030			F-box family protein with a do...		Potri.011G006900 [exp]	60.28	0.7575

Compare expression of checked genes

Potri.018G011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.