Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 296 / 1e-92 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G24720 283 / 4e-88 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G29110 283 / 5e-88 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G27100 273 / 2e-84 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29100 270 / 3e-83 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 264 / 1e-81 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G24710 265 / 2e-81 ATGLR2.3 glutamate receptor 2.3 (.1) AT4G31710 228 / 6e-68 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT1G05200 217 / 1e-63 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G17260 213 / 2e-62 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012000 [exp] 522 / 3e-179 AT2G29110 821 / 0.0 glutamate receptor 2.8 (.1) Potri.018G011800 [exp] 475 / 8e-161 AT2G29110 805 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012300 [exp] 467 / 7e-158 AT2G24720 822 / 0.0 glutamate receptor 2.2 (.1) Potri.006G270400 [exp] 424 / 5e-141 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268900 [exp] 422 / 8e-141 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012600 [exp] 419 / 4e-139 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G011500 [exp] 417 / 8e-139 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012900 [exp] 416 / 4e-138 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 413 / 4e-137 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 345 / 6e-111 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 319 / 2e-104 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 316 / 6e-101 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 310 / 5e-98 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 293 / 1e-91 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10035980 [exp] 212 / 1e-61 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10039671 [exp] 211 / 2e-61 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10016031 [exp] 208 / 2e-60 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10012245 [exp] 208 / 2e-60 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10031560 [exp] 207 / 3e-60 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Potri.018G011650.1 pacid=42801940 polypeptide=Potri.018G011650.1.p locus=Potri.018G011650 ID=Potri.018G011650.1.v4.1 annot-version=v4.1 ATGTTTTTGATACTGTTGTCAAAACATTGCCTTATGATTTGCCTTATGAATATGTCCCCTTTGCCAAGCCTGACGGCGAGCCTGCTGGAACTTACAATGA TCTGGTCTATCAAGTACTTAAAGAATTTTGATGCTGTGGTTGGAGATATTACCATTGTCTACAGCAGATCCTTGTACGTCGACTATACTTTGCCTTTCAT AGAAAGCGGTGTCTCCGTTATTGTTCCTATAGAAGGTCACCCTACCGAAAATGCTTGGTTCTTCTTGAAACCTTTGACATGGGACCTATGGGTGAGCAGT CTTTTATTCTTTGTTTTCTTTGGATTTGTTGTCTGGGTTCTTGAGCACAGAATAAATGGAGATTTTCGAGGACCTGCTTCACATCAAGCTGGCACTATCT TCTGGTTTTCCTTCTCAACAATGGTGTTCGCACAACGGGAGAGAGTGGTTAGCAAATTGTCTAGAGTAGTGGTAATCATATGGTGTTTTGTTGTGCTGAT CCTCACACAGAGTTATACCGCCAGTTTATCTAGCCTACTTACTGTCCAGCAGCTAAAAGTTACTGATGTAAATGAGCTCGTTAACAAGGGGGAGTACGTG GGCTACCAGAAGGGTTCTTTTGTTCTAGGAATCTTGTTAGGCTTGGGGTTCGACAAGTCCAAGATCTTGGCGTATAATTCTCCAGAAGAATGCCACGAAC TCTTCTCCAAAGGAAGTGGAAATGGTGGTATTGCTGCTGCATTCGATGAAATTCCATATATTAGGCTCTTAATGCCAGAATATCGCTCCAAATATACAGT GATTGATCTTTCATTTAAAATGGGAGGTTTTGGCTTTGTCTTCCCTAAAGGTTCTCCTCTTGTACCTGACATATCAAGGGCGATTTTGAATATGGTCGAG GGAGATAAAATGAAGGGCATCCAGGATAAATGGTTTGGCGATCAAACTAGTTGTCCAGATTCCGGCCCTCAGTTTCGTCTAATACCCTTAGTATCAATAC TTTCTGGGGATTATTTTTAA
AA sequence Show only first row Show all	>Potri.018G011650.1 pacid=42801940 polypeptide=Potri.018G011650.1.p locus=Potri.018G011650 ID=Potri.018G011650.1.v4.1 annot-version=v4.1 MFLILLSKHCLMICLMNMSPLPSLTASLLELTMIWSIKYLKNFDAVVGDITIVYSRSLYVDYTLPFIESGVSVIVPIEGHPTENAWFFLKPLTWDLWVSS LLFFVFFGFVVWVLEHRINGDFRGPASHQAGTIFWFSFSTMVFAQRERVVSKLSRVVVIIWCFVVLILTQSYTASLSSLLTVQQLKVTDVNELVNKGEYV GYQKGSFVLGILLGLGFDKSKILAYNSPEECHELFSKGSGNGGIAAAFDEIPYIRLLMPEYRSKYTVIDLSFKMGGFGFVFPKGSPLVPDISRAILNMVE GDKMKGIQDKWFGDQTSCPDSGPQFRLIPLVSILSGDYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G011650 [exp]	0	1
AT4G20325			unknown protein		Potri.006G280600 [exp]	5.47	0.8907
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	7.07	0.8838
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009800 [exp]	8.48	0.8567
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	9.00	0.8882	HMGB906,ATHMG.1
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.008G100200 [exp]	10.67	0.8502
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	12.36	0.8623
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	12.40	0.8699
AT5G05800			unknown protein		Potri.001G268908 [exp]	12.96	0.8458
AT1G25370			Protein of unknown function (D...		Potri.008G122600 [exp]	13.11	0.8262
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.010G032301 [exp]	13.26	0.8512

Compare expression of checked genes

Potri.018G011650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.