Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 822 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 821 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 817 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 802 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 792 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT2G29100 791 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 709 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 708 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT5G11180 525 / 9e-172 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT1G42540 464 / 4e-148 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012300 [exp] 1658 / 0 AT2G24720 822 / 0.0 glutamate receptor 2.2 (.1) Potri.018G011800 [exp] 1636 / 0 AT2G29110 805 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268900 [exp] 1343 / 0 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.006G270400 [exp] 1339 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.018G011500 [exp] 1335 / 0 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 1315 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012100 [exp] 1310 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 1309 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268200 [exp] 1301 / 0 AT2G29120 841 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 981 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 862 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 823 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 818 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 556 / 0 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 475 / 3e-152 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 467 / 4e-149 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 461 / 5e-147 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 457 / 4e-146 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 447 / 5e-142 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.018G012000.2 pacid=42800956 polypeptide=Potri.018G012000.2.p locus=Potri.018G012000 ID=Potri.018G012000.2.v4.1 annot-version=v4.1 ATGAAGAAAAACCATTCAAAGGCTGTTCTCTCCTTCTTCTTCTTTTCTGTAAAGATTCTGTTCACAGGAATGGGAATGGCTGAAAACACATCTATCCCAG TGAATGTTGGTGTGGTTCTTGATCTGGACAGTGATTTGGATGGCAGAATTGCGTTGAGTTGCATCGAAATGGCCCTCTCAGACTTTTATGCCACTCATGG TGACTACAAAACCAGACTAGCCCTCACCACCAGGGACTCCATGAAAGATGTTGTTGGTGCAGCTGCAGCAGCCTTGGACTTGATAAAAAATGTGGAAGTC CAAGCAATCTTAGGGCCAACAACATCAATGCAAGCCAACTTTGTTATTGACCTAGGAGAAAAAGCTCAGGTGCCCATAATGTCGTTTTCTGCAACAAGTC CTTCTCTTACTTCCATTAAGAGTGCCTATTTTTTTCGAGCTACACTTAATGACTCAACTCAGGTGAATCCCATAAGTGCATTAGTTCAAGCCTTCGGATG GAGAGAAGCAGTACCCATCTACATCGACAACGAATATGGCGAGGGAATCATACCTTATTTAACTGATGCTTTGCAAGCAGTCGACGCTCGTGTCTCCTAC CGGAGTGTCATTTCTCCATCAGCCACTGATGAACAAATTGTTGAGGAGCTTTATAAGTTGATGGGAATGCAAACTAGAGTTTTCATTGTGCACATGTATG GCTCTCTTGGCACTCGGCTTTTTGCCAAGGCAAAAGAGATTGGTATGATGAGTGAAGGCTGTGTTTGGATCATGACTGATGGTCTGACAGATGATTTGTT GAGTTCACCAAATCCTTCTGTTACTGGGACAATGCAAGGGGTACTGGGTGTTAAGCCTTATGTTCCAAGTACAAAGGAGATCCAAGATTTTCGAGTTCGG TGGAAAAGGAAATTCCAACAAGATAATCCATATATTATTGATGCTGAGTTGAACATTTACGGACTACGGGGCTATGATGTTGCCACGGCTTTGGCCTTGG CAGTTGAGAAAGCTGGAACTAAAAATTTTGGCTTCCGAAAGGAAAATGTTTCTAGCAGTTCATCAACGGATCTTGCAACTCTTGGCGTCTCTTTAAATGG TCCAAAGCTTCTTCAAGCTTTATCAAACACTAGTTTCAAAGGCCTTACAGGAGATTACCATTTTGCTGATGGGCAGTTGCAACCTCCAGCTTTCCAGATA GTTAATGTGAATGGAAATGGAGGGAGAGAGATTGGGCTTTGGACACCAACAAAAAGACTTGTGAAACAATTGGTTCCTAATAATGGTACAAATTCAACTT CTCTGTCCGGTATTTCAACCGTGATTTTCCCAGGTGACACAACTGTTGCTCCAAAGGGATTTAGGATTCCCGCAAAAGAAAATAAGTTGAGAATAGGAGT GCCGGTGAAGTCCAGCTTCAGACAGTTTGTGGACGTCAGAAAATATCCTGGTTCTAACACCACAGAAATCACCGGATTCTGCATAGATGTTTTTGATACT GTTGTCAAAACATTGCCTAATGATTTTTCTTATGAATATGTCCCCTTTGCCAACCCTGACGGCGAGCCTGCTGGAACTTACAATGATCTGGTCTATCAAG TGTACTTAAAGAATTTTGATGCTGTGGTTGGAGATATTACCATTGTCTACAGCAGATCCTTGTACGTCGAATATACTTTGCCTTTCATGGAAAGCGGTGT CTCCGTTTTTGTTCCTATAGAAGGTCACACTACCGAAAATGCTTGGTTCTTCTTGAAACCTTTGACATGGGACCTTTGGGTGAGCAGTCTTTTATTCTTT GTTTTCATTGGATTTGTTGTCTGGGTTCTTGAGCACAGAATAAATGGAGATTTTCGAGGACCTGCTTCACATCAAGCTGGCACTATCTTCTGGTTTTCCT TCTCAACAATGGTGTTCGCACAACGGGAGAGAGTGGTTAGCAACTTGTCTAGAGTAGTGGTAATCATATGGTGTTTTGTTGTGCTGATCCTCACACAGAG TTATACCGCCAGTTTATCTAGCCTACTTACAGTCCAGCGGCTAAAAGTTACTGATGTAAATGAGCTCGTGAACAAGGGGGAGTACGTGGGCTACCAGAAG GGTTCTTTTGTTCTAGGAATCTTGTTAGGCTTGGGGTTCGATAAGTCCAAGATCTTGGCGTATAATTCTCCAGAAGAATGCCACGAACTCTTCTCCAAAG GAAGTGGAAATGGTGGTATTGCTGCTGCATTCGATGAAATTCCATATATTAGGCTCTTAATGCCAGAATATCGCTCCAAATATACAGTGATTGATCTTTC ATTTAAAATGGGAGGTTTTGGCTTCGTCTTCCCTAAAGGTTCTCCTCTTGTACCTGACATATCAAGGGCGATTTTGAATATGGTCGAGGGAGATAAAATG AAGGGCATCCAGGATAAATGGTTTGGCGATCAAACTAGTTATCCAGATTCCGGAACCTCAGTTCCGTCTAATACCCTTAGTATCAAGACTTTCTGGGGAT TATTTTTAATTGCTGGAATAGCTGCACTTGCAGCTATCATTATCTTCATAGTGATGTTTGTTCATCAGGAGGGGAGAGTAGTCTTGGGACCCTCTGACTC CACAACTTCAATATGGAGTAAAATTCGACATTTGTTTAGCATTTTCAATCAAAGGGACTTCACATCCCATATCGAAGTGAATGAAAGGAATGGGATTCAT TTTCCAAGTGTGGGCATGGCAAGTCCGTCGGGCTTTTCAGCTCACACTGAATTTCATGGATATCCATCCTCTGCAGGTCGTGATTCCAGTCCAAATAGCC AGGCATCTCATGAAGTAGTGATAATAAGTGCTGATAAGCTCTCCAACCCAAATCAAGAGAGGCCCGTTAAGGGAAATCAGAAGTCTAATGTTAATCATCA GACGCGGACCCGTACTGATCAGAGGTCTTATGCTATTATTCATCAGAGGTCTAAATCCTATTAG
AA sequence Show only first row Show all	>Potri.018G012000.2 pacid=42800956 polypeptide=Potri.018G012000.2.p locus=Potri.018G012000 ID=Potri.018G012000.2.v4.1 annot-version=v4.1 MKKNHSKAVLSFFFFSVKILFTGMGMAENTSIPVNVGVVLDLDSDLDGRIALSCIEMALSDFYATHGDYKTRLALTTRDSMKDVVGAAAAALDLIKNVEV QAILGPTTSMQANFVIDLGEKAQVPIMSFSATSPSLTSIKSAYFFRATLNDSTQVNPISALVQAFGWREAVPIYIDNEYGEGIIPYLTDALQAVDARVSY RSVISPSATDEQIVEELYKLMGMQTRVFIVHMYGSLGTRLFAKAKEIGMMSEGCVWIMTDGLTDDLLSSPNPSVTGTMQGVLGVKPYVPSTKEIQDFRVR WKRKFQQDNPYIIDAELNIYGLRGYDVATALALAVEKAGTKNFGFRKENVSSSSSTDLATLGVSLNGPKLLQALSNTSFKGLTGDYHFADGQLQPPAFQI VNVNGNGGREIGLWTPTKRLVKQLVPNNGTNSTSLSGISTVIFPGDTTVAPKGFRIPAKENKLRIGVPVKSSFRQFVDVRKYPGSNTTEITGFCIDVFDT VVKTLPNDFSYEYVPFANPDGEPAGTYNDLVYQVYLKNFDAVVGDITIVYSRSLYVEYTLPFMESGVSVFVPIEGHTTENAWFFLKPLTWDLWVSSLLFF VFIGFVVWVLEHRINGDFRGPASHQAGTIFWFSFSTMVFAQRERVVSNLSRVVVIIWCFVVLILTQSYTASLSSLLTVQRLKVTDVNELVNKGEYVGYQK GSFVLGILLGLGFDKSKILAYNSPEECHELFSKGSGNGGIAAAFDEIPYIRLLMPEYRSKYTVIDLSFKMGGFGFVFPKGSPLVPDISRAILNMVEGDKM KGIQDKWFGDQTSYPDSGTSVPSNTLSIKTFWGLFLIAGIAALAAIIIFIVMFVHQEGRVVLGPSDSTTSIWSKIRHLFSIFNQRDFTSHIEVNERNGIH FPSVGMASPSGFSAHTEFHGYPSSAGRDSSPNSQASHEVVIISADKLSNPNQERPVKGNQKSNVNHQTRTRTDQRSYAIIHQRSKSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G012000 [exp]	0	1
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G012300 [exp]	2.00	0.9873
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.008G187400 [exp]	8.12	0.9671	Pt-AOAT1.2
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	8.94	0.9723
AT4G14480			Protein kinase superfamily pro...		Potri.008G163800 [exp]	10.95	0.9388
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	12.12	0.9666
AT5G25840			Protein of unknown function (D...		Potri.018G045600 [exp]	13.78	0.9466
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	16.00	0.9606
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.011G087200 [exp]	17.32	0.9148	Pt-VTC2.1
AT3G01060			unknown protein		Potri.017G090100 [exp]	17.88	0.9553
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G011800 [exp]	18.70	0.9228

Compare expression of checked genes

Potri.018G012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.