Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 52 / 9e-09 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G48400 50 / 4e-08 ATGLR1.2 GLUTAMATE RECEPTOR 1.2, Glutamate receptor family protein (.1.2) AT5G27100 48 / 2e-07 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29100 47 / 3e-07 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT4G31710 47 / 5e-07 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT2G29120 44 / 6e-06 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT5G11180 44 / 7e-06 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT2G24720 43 / 1e-05 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G24710 42 / 2e-05 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G48410 40 / 8e-05 ATGLR1.3 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, glutamate receptor 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G011800 [exp] 129 / 5e-36 AT2G29110 805 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012300 [exp] 122 / 1e-33 AT2G24720 822 / 0.0 glutamate receptor 2.2 (.1) Potri.018G012000 [exp] 122 / 2e-33 AT2G29110 821 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 88 / 2e-21 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268450 [exp] 84 / 5e-21 AT5G27100 243 / 8e-75 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) Potri.006G270400 [exp] 84 / 3e-20 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268900 [exp] 84 / 5e-20 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268700 [exp] 84 / 7e-20 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G011500 [exp] 80 / 1e-18 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020109 [exp] 59 / 2e-11 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 59 / 3e-11 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026914 [exp] 53 / 3e-10 AT2G29100 65 / 1e-13 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Lus10026877 [exp] 54 / 6e-10 AT2G29110 120 / 9e-32 glutamate receptor 2.8 (.1) Lus10003436 [exp] 50 / 4e-08 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G012800.2 pacid=42801392 polypeptide=Potri.018G012800.2.p locus=Potri.018G012800 ID=Potri.018G012800.2.v4.1 annot-version=v4.1 ATGAAGAAAAACCATTCAAAGGCTGTTCTCTCCTTCATTTTTTGTGTAAAGATTCTGTTCACAGCAATGGGAATGGCTGAAAACACATCTATCCCAGTGA ATGTTGGTGTGGTTCTTGATCTGGACAGTGATTTGGATGGCAGAATTGCGTTGAGTTGCATCGAAATGGCCCTCTCAGACTTTTATGCCGCTCATGGTGA CTACAAAACCAGACTAGCCCTCAACACCAGGGACTCCAAGAAAGATGTTGTTGGTGCAGCTGCAGCAGGTTCCCTCTCTCACTCTCACCCTTTAAAACTT GATGTTATCATCAGTATGCTCCAATCATGA
AA sequence Show only first row Show all	>Potri.018G012800.2 pacid=42801392 polypeptide=Potri.018G012800.2.p locus=Potri.018G012800 ID=Potri.018G012800.2.v4.1 annot-version=v4.1 MKKNHSKAVLSFIFCVKILFTAMGMAENTSIPVNVGVVLDLDSDLDGRIALSCIEMALSDFYAAHGDYKTRLALNTRDSKKDVVGAAAAGSLSHSHPLKL DVIISMLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G012800 [exp]	0	1
					Potri.002G169350 [exp]	3.46	0.9047
AT3G25905		CLE27	CLAVATA3/ESR-RELATED 27 (.1)		Potri.008G120800 [exp]	13.41	0.9057
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	14.17	0.9248
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	16.61	0.9309
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	20.59	0.9214
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G050000 [exp]	21.16	0.8937
					Potri.011G087000 [exp]	26.32	0.8804
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G050100 [exp]	27.03	0.8881
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G050300 [exp]	27.65	0.8880
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.006G205000 [exp]	28.56	0.9131

Compare expression of checked genes

Potri.018G012800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.