Plant FIBer expression Database

Potri.018G012850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G012850.1 pacid=42801641 polypeptide=Potri.018G012850.1.p locus=Potri.018G012850 ID=Potri.018G012850.1.v4.1 annot-version=v4.1
ATGACCCATAGATGCCCTGTCCCCTTCTTCCTCCTCTCAAACCGACAGACAGCCCACAAACCATCCGATCTCTTCCCAAAATTCATCACAAGCAACAAAA
AACACACTCGATTTTGGCCAGAAATTGCAACCCCATTCTCACCCAAAAAAGAAGAACCACTGGCAGCTGAGTGGAGGAAAGTCGCCTCCGAATATATGAC
CACTGTTATGCATCTCTTTTTGGCTTACCCACAGACCCATCATCGAAACCCCAATGGCATACTAACGGTTACCTCAGACCATCCCTCTGACAACCCCCAC
AAACTGATTTCTCCCCCTTCTCTCTCATGGTCTCCGCTGGAAATTCCTAGGCCGATCTGA
AA sequence
>Potri.018G012850.1 pacid=42801641 polypeptide=Potri.018G012850.1.p locus=Potri.018G012850 ID=Potri.018G012850.1.v4.1 annot-version=v4.1
MTHRCPVPFFLLSNRQTAHKPSDLFPKFITSNKKHTRFWPEIATPFSPKKEEPLAAEWRKVASEYMTTVMHLFLAYPQTHHRNPNGILTVTSDHPSDNPH
KLISPPSLSWSPLEIPRPI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G012850
[exp]
0 1
AT3G46790 CRR2 CHLORORESPIRATORY REDUCTION 2,... Potri.009G037600
[exp]
7.00 0.9195 CRR2.1
AT3G15000 cobalt ion binding (.1) Potri.011G112200
[exp]
12.96 0.9034
AT1G55000 peptidoglycan-binding LysM dom... Potri.005G032100
[exp]
14.38 0.8948
AT2G45680 TCP TCP9 TCP family transcription facto... Potri.001G111800
[exp]
14.69 0.9012
AT4G25270 OTP70 organelle transcript processin... Potri.015G128800
[exp]
17.77 0.9103
AT3G09085 Protein of unknown function (D... Potri.006G096200
[exp]
19.74 0.8841
AT5G57450 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG O... Potri.018G093100
[exp]
28.46 0.8822
AT1G03540 Pentatricopeptide repeat (PPR-... Potri.013G145000
[exp]
28.61 0.8922
AT3G06200 P-loop containing nucleoside t... Potri.010G029400
[exp]
29.81 0.8983
AT1G80550 Pentatricopeptide repeat (PPR)... Potri.005G147200
[exp]
33.54 0.8846

Potri.018G012850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.