Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 881 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 875 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G27100 844 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29100 844 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G24720 843 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G24710 817 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 743 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 736 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT5G11180 683 / 0 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT1G42540 486 / 7e-157 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012100 [exp] 1399 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 1380 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 1372 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268900 [exp] 1337 / 0 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.006G270400 [exp] 1323 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.018G011500 [exp] 1310 / 0 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 1309 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268200 [exp] 1306 / 0 AT2G29120 841 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268700 [exp] 1298 / 0 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 1044 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 900 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 858 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 857 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 565 / 0 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 494 / 2e-159 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 486 / 1e-156 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 486 / 2e-156 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039672 [exp] 475 / 9e-153 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10035980 [exp] 462 / 4e-147 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.018G013200.1 pacid=42802047 polypeptide=Potri.018G013200.1.p locus=Potri.018G013200 ID=Potri.018G013200.1.v4.1 annot-version=v4.1 ATGAGAAAAAACCTTTCAAATCCTGTTCCATCTTTCTTTTTCTTTCTTTCTTTGAAGTTTTTCTTCGTAGCCATGGGGGTGGCCCAAGACACAACATCTA TCCCTGTGAATGTTGGTGTCGTTCTTGACTTGGATGATGTTTTGTATGGAAATATCGGGTTGAGTTGCATCAACATGGCCCTTTCAGACTTCTATGCCAG TCACAGTGACTACAAAACCAGACTGGTCCTCACCACCATAGACTCCAAGAGAGATGTTGTTGGTGCAGCTGCAGCAGCCCTGGATTTGATAAAAAATGTG GAAGTGCAAGCAATCATAGGGCCAACTTCATCAATGCAAGCCAAATTTGTTATTGAACTTGGAGAAAAAGCTCAGGTGCCCATCATATCATTTTCGGCAT CAAGTCCATCTCTTACTTCAATCAGGAGTCCATATTTTTTCCGAGCTACACAAAATGACTCGACTCAAGTGAATGCCATAACTGCATTAGTTCAAGCCTT TGGATGGAGAGCAGCAGTGCCCATCTACATTGACAACGAGTATGGAGAGGGAATCATTCCTTATTTGACTGAGGCCTTGCAAGCAGTTGATGCTCGTGTC CCTTATCAGAGTGTCATTTCTCCATCAGCCACTGACGATCAAATTGTCAAGGAGCTTTACAAGTTGATGACAATGCAGACTAGAGTTTTCATTGTGCACA TGTATCAATCTCTTGGCACTCGGCTTTTTGCCAAAGCGAAAGAGATTGGAATGATGAGTGAAGGATATGTTTGGATCATGACTGATGGTCTGACTGCTGA TTTATTGAGTACACCTAATTACTCTGTCACCGATACAATGCAAGGGGTACTGGGTATTAAACCTCATGTTCCAAGGACAAAAGAGCTCAAAGATTTTCGA GTTCGGTGGAAAAGGAAATTCCAACAAGATAATCCTGACATCATTGATGCTGAGTTGAACATATATGGACTATGGGCCTATGATGCTGCAACGGCATTGG CCTTTGCAGTTGAGAAAATGGAAAATTTTGGCTTCCAAAAGGTAAATGTTTCTAGCAATTCATCAACAGATCTTGCCACTATTGGAGTCTCTTTAAATGG TCCAAACCTTCTTCAAGCTTTATCAAACACTAGCTTCAAAGGCCTTTCGGGAGATTACCTTTTTGTTGATGGGAAGTTACAAGCATCAGCCTTCCGGATA GTTAATGTGAATGGCAATGGAGGAAGAACGGTTGGATTCTGGACACCAACGAAAAGACTTGTGCAAACATTGAATTCAACAACAACTAAAAGTATGAATT CGTCTTCTGTGTCTGATATTTCAACTGTAATATGGCCTGGTGATAACACTGCTGCTCCCAAGGGTTGGGAGATTCCATCAAACGGGAAGAAGTTGAAAAT TGGAGTGCCAGTAAAGGATGGCTTCAGTCAGTTTGTGTCAGTGACAAGAGATCCCATCTCTAACACCACAACAGTCAAGGGATACAGCATAGATGTTTTT GAAGCTGTAGTGGGATCATTGCCTTACGCTCTGCCTTATGAGTACATCCCCTTTGCAAATCCTGATGGAGGAACTGCTGGAAATTATGATAGTCTGGTCT ATCAAGTGTACTTGCAGAAATATGATGCTGTGGTGGGAGATACAACCATCGTCTTCAACAGGTCCTTGTATGTTGATTTTACCTTGCCTTACACGGAAAG TGGTGTCTCCATGATCGTTCCTATCATAGAAAACAATAACAAAAATGCATGGGTTTTCTTGAGGCCTTTGACATGGGACCTTTGGGTCACAAGTTTTTGT TTTTTCATTTTCATTGGATTTGTGGTCTGGGTTCTTGAACACAGAATAAATGAAGATTTTCGAGGCCCTCCTTCACATCACATTGGCACTAGCTTTTGGT TTTCCTTCTCAACCATGATTTTCGCTCAACGGGAGAGAGTGGTTAACAACCTGTCTAGAGTAGTGCTTATCATATGGTGTTTCGTTGTGCTGATCTTAAC ACAAAGTTATACTGCCAGTTTAACAAGCCTACTCACAGTCCAGCGGCTACAGCCTAAAGTTACTGATGTAAATGAGCTCATTAAGAAGGGGGAGTATGTT GGCTACCAGGAAGGTTCTTTTGTTCCCGGAATCTTGTTAGAGTTGGGTTTTGACAAGTCAAAGCTCGTGATGTATAATTCAGCTGAAAAATGTGATGAAC TTTTCTCCAAAGGAAGTGGAAATGGTGGTATTGCAGCTGCTTTTGATGAAGCACCATATATGAAGCTCTTTCTGTCGAAGTATTGCTCCAAATATACCAT GATTGATCCCACATTTAAAATGGCTGGTTTTGCCTTTGTCTTCCCTAAAGGTTCTCCTCTAGTACCTGATGTATCAAGGGCAATTCTAAATGTGACTGAA GAAGATAAAATGAAGCAAATCGCGGATGCATGGTTTGGAAAACAAAGCAGTTGTCCAGATTCCAGCACCTTAATTTCATCAAATAGCCTTAGCCTCAAGA GTTTCGGGGGATTATTTTTAATTGCTGGAATAGCTTCACTTTCAGCTCTCTTAATCTTCATAGTCAAGTTTGTTTACCAGGAAAGGAGAGTCTTGAGTCC TGATGATCCCAGAGCTTCAATGTGGCGCAGAATACAAAATTTGTTCATAATTTTCAATGAAAGGGACCTAACAGCTCATGCATTCAGAAAAAATGAAGTG AATGACAGAAGTGGTATTAATCTGCCTTATGTGGGCGAGCCAAGTCCATTAGCCAATTCAGTCCACACAGAATTTCCTGGAGATCCACCCTCTTCAGAGT ATGATTCAACTCCCAATAGGCAAGAATCTCAAGAGTTCGTAATAGATATCGATCAGCTTAACAACCCATTTGAAGAGAGGCGAGCAGCTTTTGACATAGC CTGTAGATTACAAAATTGA
AA sequence Show only first row Show all	>Potri.018G013200.1 pacid=42802047 polypeptide=Potri.018G013200.1.p locus=Potri.018G013200 ID=Potri.018G013200.1.v4.1 annot-version=v4.1 MRKNLSNPVPSFFFFLSLKFFFVAMGVAQDTTSIPVNVGVVLDLDDVLYGNIGLSCINMALSDFYASHSDYKTRLVLTTIDSKRDVVGAAAAALDLIKNV EVQAIIGPTSSMQAKFVIELGEKAQVPIISFSASSPSLTSIRSPYFFRATQNDSTQVNAITALVQAFGWRAAVPIYIDNEYGEGIIPYLTEALQAVDARV PYQSVISPSATDDQIVKELYKLMTMQTRVFIVHMYQSLGTRLFAKAKEIGMMSEGYVWIMTDGLTADLLSTPNYSVTDTMQGVLGIKPHVPRTKELKDFR VRWKRKFQQDNPDIIDAELNIYGLWAYDAATALAFAVEKMENFGFQKVNVSSNSSTDLATIGVSLNGPNLLQALSNTSFKGLSGDYLFVDGKLQASAFRI VNVNGNGGRTVGFWTPTKRLVQTLNSTTTKSMNSSSVSDISTVIWPGDNTAAPKGWEIPSNGKKLKIGVPVKDGFSQFVSVTRDPISNTTTVKGYSIDVF EAVVGSLPYALPYEYIPFANPDGGTAGNYDSLVYQVYLQKYDAVVGDTTIVFNRSLYVDFTLPYTESGVSMIVPIIENNNKNAWVFLRPLTWDLWVTSFC FFIFIGFVVWVLEHRINEDFRGPPSHHIGTSFWFSFSTMIFAQRERVVNNLSRVVLIIWCFVVLILTQSYTASLTSLLTVQRLQPKVTDVNELIKKGEYV GYQEGSFVPGILLELGFDKSKLVMYNSAEKCDELFSKGSGNGGIAAAFDEAPYMKLFLSKYCSKYTMIDPTFKMAGFAFVFPKGSPLVPDVSRAILNVTE EDKMKQIADAWFGKQSSCPDSSTLISSNSLSLKSFGGLFLIAGIASLSALLIFIVKFVYQERRVLSPDDPRASMWRRIQNLFIIFNERDLTAHAFRKNEV NDRSGINLPYVGEPSPLANSVHTEFPGDPPSSEYDSTPNRQESQEFVIDIDQLNNPFEERRAAFDIACRLQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013200 [exp]	0	1
					Potri.011G008676 [exp]	3.00	0.7909
AT2G24370			Protein kinase protein with ad...		Potri.011G008356 [exp]	4.24	0.7857
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117350 [exp]	6.32	0.7549
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.015G143950 [exp]	7.34	0.7382
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	13.78	0.7146
AT1G15780			unknown protein		Potri.003G025500 [exp]	22.71	0.7090
AT2G34930			disease resistance family prot...		Potri.015G024800 [exp]	24.37	0.6914
AT4G33440			Pectin lyase-like superfamily ...		Potri.007G105800 [exp]	28.39	0.6408
AT2G18420			Gibberellin-regulated family p...		Potri.012G076700 [exp]	31.93	0.6673
AT5G36930			Disease resistance protein (TI...		Potri.013G037599 [exp]	44.82	0.6570

Compare expression of checked genes

Potri.018G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.