Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31720 207 / 5e-70 STG1, TAFII15, TAF10 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034375 [exp] 195 / 3e-65 AT4G31720 199 / 5e-67 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2) Lus10005077 [exp] 176 / 4e-57 AT4G31720 183 / 4e-60 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF03540 [poplar] [flax] TFIID_30kDa Transcription initiation factor TFIID 23-30kDa subunit
Representative CDS sequence Show only first row Show all	>Potri.018G013300.1 pacid=42800523 polypeptide=Potri.018G013300.1.p locus=Potri.018G013300 ID=Potri.018G013300.1.v4.1 annot-version=v4.1 ATGAACAACACGAGCAGCAGTAACAGTCAGCAACAGCAGCAATCAAGTGAAGCAAGGCATGATGATGATGCCGTTCTCACTGAATTCCTCGCTTCTTTAA TGGATTACACTCCCACTATTCCTGATGAATTAGTGGAGCATTACTTGGCTAAAAGTGGGTTTCAATGTCCTGATGTCAGATTGGTTAGATTAGTAGCTGT TGCGACACAGAAGTTTGTTGCAGATGTTGCAACTGATGCTCTTCAGCAATGCAAGGCACGGCCGGCACCAGTAGTTAAAGACAAAAGGGACAAGCAGCAA AAGGAAAAGCGCCTAATTTTGACAATGGAGGATCTGTCGAAGGCTCTGAGTGAGTATGGTGTAAACGTGAAGCACCAGGAGTATTTTGCTGATAGCCCAT CGACTGGGATGGATCCTGCTTCAAGAGAAGAGTGA
AA sequence Show only first row Show all	>Potri.018G013300.1 pacid=42800523 polypeptide=Potri.018G013300.1.p locus=Potri.018G013300 ID=Potri.018G013300.1.v4.1 annot-version=v4.1 MNNTSSSNSQQQQQSSEARHDDDAVLTEFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLVRLVAVATQKFVADVATDALQQCKARPAPVVKDKRDKQQ KEKRLILTMEDLSKALSEYGVNVKHQEYFADSPSTGMDPASREE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Potri.018G013300 [exp]	0	1
AT5G18800			Cox19-like CHCH family protein...		Potri.010G026000 [exp]	6.78	0.8123
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Potri.009G133800 [exp]	11.61	0.7902	Pt-PAD1.3
AT3G11500			Small nuclear ribonucleoprotei...		Potri.016G078100 [exp]	12.96	0.7892
					Potri.002G138200 [exp]	16.37	0.6323
AT3G52860			unknown protein		Potri.014G127900 [exp]	16.70	0.7444
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.009G110100 [exp]	18.97	0.7754
AT1G80500			SNARE-like superfamily protein...		Potri.003G183400 [exp]	20.97	0.7739
AT5G25940			early nodulin-related (.1)		Potri.019G033700 [exp]	22.58	0.7634
AT1G17880		ATBTF3	basic transcription factor 3 (...		Potri.015G029800 [exp]	22.69	0.7869
AT5G17190			unknown protein		Potri.008G133600 [exp]	23.36	0.7514

Compare expression of checked genes

Potri.018G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.