Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10730 422 / 3e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 260 / 9e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32220 192 / 8e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G28840 41 / 0.0005 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G268000 [exp] 507 / 0 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 350 / 9e-122 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G136900 [exp] 192 / 9e-60 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020108 [exp] 419 / 6e-149 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 277 / 6e-93 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010419 [exp] 194 / 9e-60 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 139 / 3e-40 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012126 [exp] 107 / 1e-28 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 82 / 2e-19 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 74 / 1e-15 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013202 [exp] 42 / 0.0004 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030720 [exp] 42 / 0.0006 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.018G013400.1 pacid=42802012 polypeptide=Potri.018G013400.1.p locus=Potri.018G013400 ID=Potri.018G013400.1.v4.1 annot-version=v4.1 ATGACTCCTCTTACTTCACGTTTGATCCAATCAAGAACTTCCCTCTCCAAATTATTTACAATTGCTGCATCAAGAAATGGGAGATATCTATCAACTGATT CTAATAAGGTCGATGAACCCTTTAAAGTTGAGGAGGCTGAGACAGTAAATGTACCTCCACCCTCGACAGAGAAGTTGCTTGTATTGGGTGGAAATGGATT TGTTGGTTCTCATATCTGCAAAGAAGCTGTAGACCGTGGCTTAACTGTTGCTAGCCTGAGCAGGTCTGGTAGGCCATCGATACATGATGCATGGGTTAAC AATGTGATTTGGCATCAAGGAAGCCTACTCTCATCTTATTCATGGACGGAAGCTCTAAATGGGGTCACCTCTGTTATTTCTTGTGTAGGTGGTTTTGGCT CACAGTCTTATATGTATAAGATTAATGGAACTGCAAATATTAATGCAATTAGAGCTGCTTCAGAAAAAGGTGTTAAAAGATTTGTTTACATCTCTTCTGC CGACTTTGGCTTGGCCAATTACTTGCTGCAAGGATATTATGAGGGAAAGAAAGCTGCTGAAACAGAGTTATTGACCAAGTTTGCATACGGAGGAGTGATT CTCAGGCCTGGGTTTATTTACGGAACTCGCAATGTTGGAAGTGTTAAGTTACCTCTAGGTGTGATTGGTTCTCCATTGGAGATGGTTCTTCAACATGCAA AACCACTCAAACAGCTTCCCCTTGTTGGGCCCTTGTTCACCCCCCCTGTCAATGTTACTGCTGTGGCAAAAGTTGCAGTAAGGGCAGCAACTGATCCAGT TTTCCCTCCAGGCATCATAGACGTTTCCGGAATACAGCGGTATAGCCAGCAAGGGGCAGCATAG
AA sequence Show only first row Show all	>Potri.018G013400.1 pacid=42802012 polypeptide=Potri.018G013400.1.p locus=Potri.018G013400 ID=Potri.018G013400.1.v4.1 annot-version=v4.1 MTPLTSRLIQSRTSLSKLFTIAASRNGRYLSTDSNKVDEPFKVEEAETVNVPPPSTEKLLVLGGNGFVGSHICKEAVDRGLTVASLSRSGRPSIHDAWVN NVIWHQGSLLSSYSWTEALNGVTSVISCVGGFGSQSYMYKINGTANINAIRAASEKGVKRFVYISSADFGLANYLLQGYYEGKKAAETELLTKFAYGGVI LRPGFIYGTRNVGSVKLPLGVIGSPLEMVLQHAKPLKQLPLVGPLFTPPVNVTAVAKVAVRAATDPVFPPGIIDVSGIQRYSQQGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.018G013400 [exp]	0	1
AT1G26665			Mediator complex, subunit Med1...		Potri.001G083801 [exp]	6.00	0.6270
AT2G25530			AFG1-like ATPase family protei...		Potri.006G252300 [exp]	7.07	0.6413
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Potri.019G062800 [exp]	16.49	0.5908
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	16.97	0.6040
					Potri.001G290000 [exp]	36.00	0.5794
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.014G042000 [exp]	42.66	0.5611
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	62.20	0.5993
AT1G78210			alpha/beta-Hydrolases superfam...		Potri.002G097400 [exp]	102.95	0.5416
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.016G002200 [exp]	110.50	0.5464	RAB2.1
AT1G20225			Thioredoxin superfamily protei...		Potri.005G244400 [exp]	113.99	0.5553

Compare expression of checked genes

Potri.018G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.