Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24765 336 / 6e-120 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT1G10630 228 / 6e-77 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 227 / 1e-76 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G70490 226 / 3e-76 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 226 / 3e-76 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 226 / 4e-76 ATARFA1B ADP-ribosylation factor A1B (.1) AT3G62290 225 / 6e-76 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT5G17060 214 / 2e-71 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 212 / 1e-70 ATARFB1C ADP-ribosylation factor B1C (.1) AT2G15310 188 / 4e-61 ATARFB1A ADP-ribosylation factor B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267800 [exp] 343 / 2e-122 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 325 / 2e-115 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 325 / 2e-115 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G005500 [exp] 228 / 5e-77 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.005G007300 [exp] 228 / 6e-77 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 228 / 6e-77 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 227 / 1e-76 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 227 / 1e-76 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 226 / 2e-76 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020106 [exp] 280 / 2e-97 AT2G24765 314 / 5e-111 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Lus10026910 [exp] 242 / 5e-83 AT2G24765 275 / 4e-96 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Lus10030884 [exp] 227 / 2e-76 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 226 / 8e-76 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 227 / 4e-75 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 223 / 5e-75 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 229 / 1e-73 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10009571 [exp] 216 / 4e-72 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 214 / 3e-71 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10030605 [exp] 226 / 8e-69 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.018G013700.1 pacid=42801183 polypeptide=Potri.018G013700.1.p locus=Potri.018G013700 ID=Potri.018G013700.1.v4.1 annot-version=v4.1 ATGGGCCTTTTGTTTAGTAGAATGTTCTCTTCTTTATTTGGTAATCAAGAAGCTCGAATCCTAGTCCTCGGTCTCGACAATGCTGGCAAAACCACCATTC TTTATCGGCTTCAAATGGGAGAGGTAGTCTCCACGATCCCAACAATTGGGTTCAATGTGGAAACTGTACAGTATAACAACATTAAGTTCCAAGTGTGGGA TTTAGGTGGACAAACAAGTATCAGGCCATATTGGAGGTGTTATTTCCCAAATACTCAAGCTGTAATTTATGTGGTAGATTCAAGTGACACGGAAAGAATT GGAATAGCCAAAGAAGAATTTCATTCAATTTTGGAGGAGGAAGAGTTGAAAGGTGCAGTTGTCCTCATTTTTGCAAACAAGCAGGATCTCCCTGGTGCAC TTGATGATGCTGCTGTGACTGAGGCATTGGAGTTGCACAAAATAAAAAGTCGCCAATGGGCCATCTTCAAAGCTTGCGCCACAAAGGGTGAAGGTCTCTT TGAGGGTTTGGACTGGTTGAGCAACACTCTCAAGTCAGGAGGTGGCTAA
AA sequence Show only first row Show all	>Potri.018G013700.1 pacid=42801183 polypeptide=Potri.018G013700.1.p locus=Potri.018G013700 ID=Potri.018G013700.1.v4.1 annot-version=v4.1 MGLLFSRMFSSLFGNQEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTERI GIAKEEFHSILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKACATKGEGLFEGLDWLSNTLKSGGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G013700 [exp]	0	1
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.002G136500 [exp]	1.73	0.8679	CRK.2
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.005G126500 [exp]	2.00	0.8191
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.003G069900 [exp]	2.00	0.8146	SEC22.2
AT1G04290			Thioesterase superfamily prote...		Potri.004G134066 [exp]	5.74	0.8163
AT4G22310			Uncharacterised protein family...		Potri.011G023100 [exp]	8.94	0.8120
AT4G29735			unknown protein		Potri.006G146800 [exp]	9.53	0.8074
AT5G55290			ATPase, V0 complex, subunit E ...		Potri.001G359600 [exp]	11.22	0.7849
AT1G80500			SNARE-like superfamily protein...		Potri.003G183400 [exp]	11.66	0.8070
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.002G145200 [exp]	15.90	0.7982
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Potri.002G016600 [exp]	17.32	0.7926	Pt-EMB1793.1

Compare expression of checked genes

Potri.018G013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.