Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-COL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24930 348 / 2e-118 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 276 / 1e-91 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G57660 240 / 9e-77 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT3G02380 236 / 2e-75 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 233 / 5e-74 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 230 / 1e-72 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT2G21320 89 / 4e-21 CO B-box zinc finger family protein (.1) AT4G38960 89 / 9e-21 CO B-box type zinc finger family protein (.1.2.3) AT1G78600 90 / 3e-20 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT2G33500 85 / 3e-18 CO COL14 B-box type zinc finger protein with CCT domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267700 [exp] 568 / 0 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.006G173600 [exp] 263 / 2e-85 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.018G096084 [exp] 262 / 5e-85 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.017G107500 [exp] 241 / 4e-77 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 156 / 2e-44 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.005G117100 [exp] 92 / 4e-22 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1) Potri.007G015200 [exp] 92 / 4e-22 AT4G38960 197 / 5e-65 B-box type zinc finger family protein (.1.2.3) Potri.004G162600 [exp] 92 / 6e-22 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3) Potri.014G134601 [exp] 93 / 2e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026909 [exp] 404 / 3e-141 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 377 / 1e-130 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026238 [exp] 186 / 1e-56 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 178 / 1e-54 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10015619 [exp] 182 / 9e-54 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10040900 [exp] 99 / 5e-23 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10031087 [exp] 90 / 4e-21 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 90 / 5e-21 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 89 / 8e-21 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10037636 [exp] 90 / 1e-20 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.018G013800.1 pacid=42801925 polypeptide=Potri.018G013800.1.p locus=Potri.018G013800 ID=Potri.018G013800.1.v4.1 annot-version=v4.1 ATGGCTTCAAAGCTCTGTGACTCATGCAAGTCAGCAACAGCAACGTTGTTTTGTCGAGCTGACTCAGCTTTTCTATGCATCAGCTGCGACTCCAAAATCC ACGCGGCAAACAAGCTTGCCTCTCGCCACGCGCGTGTCTCGGTCTGCGAAGTCTGTGAGCAAGCCCCAGCCCATTTCACCTGCAAGGCAGACGCGGCTGC TCTCTGTGTTACCTGTGACCGTGACATCCACTCAGCAAACCCTCTAGCTAGTCGGCACGAGCGTGTCCCTATCACTCCGTTTTTCGACTCATCCTCCACT GTGCACGGCGGTGGGGAAGCCGTGAACTTGTTGGAGGATCGGTACTTTGATGAAGTGGATGGTGGTCGTGGTGATGTTAGCAGGGAGGAGGCAGAGGCGG AGTCGTGGCTGTTGCCTAACCCGGGTGGGGGGACTACTAAGGGGGTGGATAGTATGGATCTGAATACCGGTCAGTATGTGTTTGGTTCGGAAATGGATCC GTATTTGGATTTGGATCCGTATGTGGATCCAAAAGTGGAAGTGCAAGAGCAGAACAGTTCAGGGACTACTGATGGGGTGGTGCCTGTGCAAAGTAACAAA CTAGGATTTCAATCTCCTGCTTTGGTCAATGATCATTGCTGCTATGAGTTGGATTTCTCTACTGGATCCAAGTCTTTTGGTGGTGGCTATGGCTATAACT CCTTGAGCCAGAGTGTTTCTTCTTCATCTCTTGATGTTGGAGTGGTACCAGATGGAAGTGGAAGTACCTTGACAGACATATCTAACCCATACTGTAGTAG ATCAGTGTGCAACGGAATGGAGTCAGCAAACCAGACAGTGCAACTATCGGCAGTTGACCGTGAAGCAAGGGTGTTGAGGTACAGAGAGAAGAGGAAGAAC AGAAAATTCGAGAAGACAATTCGATACGCATCAAGAAAAGCCTATGCCGAAACAAGGCCACGAATCAAAGGAAGGTTCGCTAAACGTACAGATACTGAAG TCGAGGTTGATCGAAGCAGTCTTTATGGATTCGGTGTCGTTCCATCGTTCTAA
AA sequence Show only first row Show all	>Potri.018G013800.1 pacid=42801925 polypeptide=Potri.018G013800.1.p locus=Potri.018G013800 ID=Potri.018G013800.1.v4.1 annot-version=v4.1 MASKLCDSCKSATATLFCRADSAFLCISCDSKIHAANKLASRHARVSVCEVCEQAPAHFTCKADAAALCVTCDRDIHSANPLASRHERVPITPFFDSSST VHGGGEAVNLLEDRYFDEVDGGRGDVSREEAEAESWLLPNPGGGTTKGVDSMDLNTGQYVFGSEMDPYLDLDPYVDPKVEVQEQNSSGTTDGVVPVQSNK LGFQSPALVNDHCCYELDFSTGSKSFGGGYGYNSLSQSVSSSSLDVGVVPDGSGSTLTDISNPYCSRSVCNGMESANQTVQLSAVDREARVLRYREKRKN RKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEVEVDRSSLYGFGVVPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.018G013800 [exp]	0	1	Pt-COL1.2
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	8.77	0.9123
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.011G057800 [exp]	14.76	0.9120	APE2.1
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	15.68	0.8953
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024100 [exp]	17.54	0.8807
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	22.95	0.8778
					Potri.016G121650 [exp]	23.32	0.8875
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	25.39	0.8906
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Potri.017G050900 [exp]	26.83	0.8581
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.001G438800 [exp]	27.16	0.8380	Pt-PP1.2
AT5G67385			Phototropic-responsive NPH3 fa...		Potri.007G053200 [exp]	33.94	0.8678

Compare expression of checked genes

Potri.018G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.