Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24970 974 / 0 Protein kinase superfamily protein (.1.2) AT1G79600 371 / 3e-118 Protein kinase superfamily protein (.1) AT1G71810 367 / 4e-117 Protein kinase superfamily protein (.1) AT3G24190 323 / 2e-99 Protein kinase superfamily protein (.1) AT4G31390 303 / 8e-93 Protein kinase superfamily protein (.1.2) AT2G39190 271 / 1e-79 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 245 / 5e-71 Protein kinase superfamily protein (.1.2.3) AT5G64940 226 / 6e-64 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 139 / 1e-34 Protein kinase superfamily protein (.1) AT5G24810 133 / 5e-32 ABC1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061000 [exp] 367 / 1e-116 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 363 / 3e-115 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 322 / 7e-99 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 297 / 1e-90 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 287 / 1e-85 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 253 / 1e-73 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G082500 [exp] 242 / 1e-69 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 238 / 4e-68 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G003400 [exp] 137 / 3e-33 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020103 [exp] 1001 / 0 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 363 / 8e-115 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 348 / 1e-109 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10036522 [exp] 280 / 7e-83 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 276 / 3e-82 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006363 [exp] 254 / 3e-74 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10041406 [exp] 253 / 3e-73 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012317 [exp] 251 / 5e-71 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10037291 [exp] 244 / 1e-70 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10036636 [exp] 241 / 3e-69 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.018G014000.2 pacid=42800362 polypeptide=Potri.018G014000.2.p locus=Potri.018G014000 ID=Potri.018G014000.2.v4.1 annot-version=v4.1 ATGAGGAATGCCTTTGTCTATCTCAAGCGTCACCGCCAACTCTCTCTTCTCTCCAATGGCACTGCCTCCACAATCATCCGAAATTTCACTTCCCAGCGCA ATCAATTTCCGCATCAAAAATCGTTTTCTACGGCGCATACGAGTGTACACGGCGGAAGGCCGTCGGCGGAGTATGCGAAACTGAGGAAAGAATCACTGGA AAGTGAATTTAAACAAGCTCTTAGTTATAGCTCTAAAAAAGATTCAATAATTTATAGATTCGGTCCCCTTTTAGCTTTATATAGAGCAACTATCATTTCC TTTCATGTTTTGAAACTTACCGCCTGGCAGTTGTTCGTACACGACATCAAAAAACGTGCTGTTAAGTTTCGTGAAACTTTGATCCGCTTGGGACCTTTTT ACGTCAAGCTTGGACAGGCTCTGAGCACTAGACCAGATATATTGCCGACTGTGTATTGTCAAGAGCTTGCTAAACTACAGGATCAAATTCCACCATTTTC AACTCATGTTGCAATTAAATCAATTGAATCCCAGCTGGGTCGCCCTATCACACAAATATTTGCTGACATAAGTCCAAAGCCTATTGCTGCAGCGTCTTTG GGACAGGTGTATAAAGCTCATCTGCATTCTGGTGAACTCGTAGCTGTTAAAGTGCAGAGACCTGGTATGCATCTTTTATTAACTCTTGATGCCCTGTTAT TCCGCATGGTTGGCGGCCAATTAAAGCGTTTTGCAAAGGCACGCAAGGATCTATTAGTAGCAGTGAATGAGATGGTCAGGCACATGTTTGATGAAATTGA TTACATCCTGGAGGGGAAAAATGCTGAACGCTTTGCTTCTCTATATGGTAATGATCCAAAAAGTCGTCAAAATGCTACAATTGGTAATGCTGTGAAAAAT GAGAAAGAAAATTGCATTAAAGTTCCTAAAATATATTGGGAATTCACTCGCAAGGCTGTTCTTACAATGGAATGGATAGATGGAATCAAACTAACTGATC AAGCTGCCCTGGAGAGGGCATGTTTGAACAGAAGGAAGCTGATTGACCTGGGATTATACTGCTCTTTGAGGCAGTTGCTTGAGGAGGGCTTTTTCCATGC TGATCCTCATCCAGGGAACCTTGTTGCTACTGACAGCGGCTCTCTTGCATATTTTGACTTTGGAATGATGGGGGATATTCCTCGCCATTACCGTGTGGGA CTTATTCAAGTGCTTGTGCACTTTGTTAATCGTGACTCTCTGGGTTTGGCAAATGATTTTCTTTCTTTGGGATTTATTCCTGAAGGGATTGACATACAAT CAGTTTCAGATGCACTGCAAGCATCCTTTGGTGATGGGACAAGACATTCTCGAGATTTTGAGGCCATATTGAACCAACTATATGATGTTATGTATGAATT CAACTTCTCACTTCCCCCAGACTATGCTCTGGTGATAAGAGCACTTGGATCACTTGAAGGCACAGCAAAACTTCTGGACTCTAATTTCAAAGTTGTTGAA AAAGCATATCCCTTTGTAATAGGGAGGCTTTTGGCAGACTCAAATCCTGATATGAGAAGAATTTTGAGAGAACTTCTCATCTGCAATGATGGATCTATAA GATGGAATCGGCTAGAGCGCCTGGGGGAAGCAATATCTGAACAAGCTTCAGACTCAACTGAAGAGTCCCCTGATTCTGAAGGAAATTCTTCAGATCCGCT GGGATGGAAATCATTTGACATGCGTTCTGTTGTTAATGCCACAGAAGATCTTTTGCTATTCATTCTATCTGAAAAAGGTGGCAGGGTGCGCGTTTTTCTT CTCCGTGATGTGATTAAAGCGGCAGATGTTTTTCTACAGGATGAAGCTGGCGTGTTAAATGAGAAACCTGAAGCAAGAGAGGCGTCAGACTCTGAGGTAA ATGCCACGCACACGAGAGTTGCCAAGGGTTTTCACTATCTACGTCAAGCAGTAAAGCTGGCCCCAGAGTTGTGGACCGCAATGCTTATACGCATGGCATT GAAGCCTGAGGTTCATAGATTTTCCTTTGACATCATTTCAGCATTAATTATGCACTTCAGCCATAAACTTCCTGAAACTTTTTGGATTTGTATGTCTAGA CATCTCCACAAGTTGGTGAGAAACCACACGTCTGATGAACTATAA
AA sequence Show only first row Show all	>Potri.018G014000.2 pacid=42800362 polypeptide=Potri.018G014000.2.p locus=Potri.018G014000 ID=Potri.018G014000.2.v4.1 annot-version=v4.1 MRNAFVYLKRHRQLSLLSNGTASTIIRNFTSQRNQFPHQKSFSTAHTSVHGGRPSAEYAKLRKESLESEFKQALSYSSKKDSIIYRFGPLLALYRATIIS FHVLKLTAWQLFVHDIKKRAVKFRETLIRLGPFYVKLGQALSTRPDILPTVYCQELAKLQDQIPPFSTHVAIKSIESQLGRPITQIFADISPKPIAAASL GQVYKAHLHSGELVAVKVQRPGMHLLLTLDALLFRMVGGQLKRFAKARKDLLVAVNEMVRHMFDEIDYILEGKNAERFASLYGNDPKSRQNATIGNAVKN EKENCIKVPKIYWEFTRKAVLTMEWIDGIKLTDQAALERACLNRRKLIDLGLYCSLRQLLEEGFFHADPHPGNLVATDSGSLAYFDFGMMGDIPRHYRVG LIQVLVHFVNRDSLGLANDFLSLGFIPEGIDIQSVSDALQASFGDGTRHSRDFEAILNQLYDVMYEFNFSLPPDYALVIRALGSLEGTAKLLDSNFKVVE KAYPFVIGRLLADSNPDMRRILRELLICNDGSIRWNRLERLGEAISEQASDSTEESPDSEGNSSDPLGWKSFDMRSVVNATEDLLLFILSEKGGRVRVFL LRDVIKAADVFLQDEAGVLNEKPEAREASDSEVNATHTRVAKGFHYLRQAVKLAPELWTAMLIRMALKPEVHRFSFDIISALIMHFSHKLPETFWICMSR HLHKLVRNHTSDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	2.23	0.8021
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	2.44	0.7653
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	9.94	0.7641
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Potri.016G130000 [exp]	12.64	0.7588
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.008G142301 [exp]	12.96	0.7356
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063500 [exp]	17.94	0.7556
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	21.90	0.7581
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	22.71	0.7440	XPO1.2
					Potri.005G156500 [exp]	25.61	0.7508
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	29.29	0.7428

Compare expression of checked genes

Potri.018G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.