Plant FIBer expression Database

Potri.018G014101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10745 37 / 4e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026240
[exp]
37 / 5e-05 AT5G10745 55 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G014101.1 pacid=42802072 polypeptide=Potri.018G014101.1.p locus=Potri.018G014101 ID=Potri.018G014101.1.v4.1 annot-version=v4.1
ATGGCGAAAGACACAATGCCACGTCCATGGTTTCTCGATTTAGTACCTCTCATGGTTGTTCTCCTCGCCGTAGCCCATGTTCTTGCTTTGGCTTATTGGA
TTTACAGATTAGCCACTGAGAAACAGCCCCAGAGAAATAAGAGACATTGA
AA sequence
>Potri.018G014101.1 pacid=42802072 polypeptide=Potri.018G014101.1.p locus=Potri.018G014101 ID=Potri.018G014101.1.v4.1 annot-version=v4.1
MAKDTMPRPWFLDLVPLMVVLLAVAHVLALAYWIYRLATEKQPQRNKRH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G10745 unknown protein Potri.018G014101
[exp]
0 1
AT5G49540 Rab5-interacting family protei... Potri.008G102200
[exp]
2.00 0.8776
AT1G77350 unknown protein Potri.019G066600
[exp]
5.47 0.8866
AT4G20150 unknown protein Potri.001G074901
[exp]
8.48 0.8810
AT1G51650 ATP synthase epsilon chain, mi... Potri.010G250000
[exp]
8.83 0.8849
AT5G42790 ARS5, ATPSM30, ... ARSENIC TOLERANCE 5, proteasom... Potri.005G229200
[exp]
13.19 0.8771
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Potri.005G087100
[exp]
14.14 0.8447
AT5G54750 Transport protein particle (TR... Potri.001G418400
[exp]
15.81 0.8773
AT1G47420 SDH5 succinate dehydrogenase 5 (.1) Potri.014G032400
[exp]
15.87 0.8691
AT1G14450 NADH dehydrogenase (ubiquinone... Potri.004G229900
[exp]
18.97 0.8589
AT3G22480 PDF2 prefoldin 2 (.1.2) Potri.001G240200
[exp]
20.83 0.8336

Potri.018G014101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.