Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10750 429 / 4e-152 Protein of unknown function (DUF1336) (.1) AT5G24990 328 / 1e-112 Protein of unknown function (DUF1336) (.1) AT5G25010 325 / 3e-111 Protein of unknown function (DUF1336) (.1) AT5G25020 277 / 8e-93 Protein of unknown function (DUF1336) (.1) AT1G06050 230 / 6e-74 Protein of unknown function (DUF1336) (.1) AT5G45560 197 / 3e-57 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 192 / 1e-55 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT2G28320 181 / 2e-51 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT5G35180 174 / 1e-48 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT3G54800 173 / 1e-48 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G027700 [exp] 245 / 1e-79 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 235 / 1e-75 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 202 / 5e-59 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 195 / 9e-57 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 195 / 1e-56 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G038800 [exp] 194 / 5e-56 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 187 / 7e-54 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 180 / 4e-51 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.018G113100 [exp] 170 / 2e-47 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042428 [exp] 414 / 8e-146 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10026907 [exp] 405 / 3e-143 AT5G10750 416 / 1e-147 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 404 / 3e-142 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10008154 [exp] 251 / 5e-82 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10007596 [exp] 196 / 5e-57 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 196 / 6e-57 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10021465 [exp] 186 / 3e-53 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 186 / 5e-53 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10040015 [exp] 176 / 2e-49 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 175 / 3e-49 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.018G014234.1 pacid=42800771 polypeptide=Potri.018G014234.1.p locus=Potri.018G014234 ID=Potri.018G014234.1.v4.1 annot-version=v4.1 ATGCCAAAAAAGAGTCCCAACACAGAGAAAAGAATTCCTACGGAGAGAGATAGGGGGTGGGAGAGAGAGATAGCCTTAAAAAACATCATGCACCCAACCA AACAGAAACACCGGAGCTCCGGTCCGGAATCAACAACCTCCAGATCATCATCAACACCCGGTTGGATCACCGAATCGATCAACGGTGGATCACTTCGCCA CGTGGACTTACACACTGGTGTTAACGGATGGGCGTCACCGCCAGGTGATCTTTTCTCTCTCCGTTCAAAAAATTACTTCATCAAAAAACAGAAATCCCCC TCCGGCGACTACCTACTCTCACCCGCCGGTATGGACTGGCTCAAATCGAGCACAAAACTCGACAACGTACTCGCTCGTCCAGATAATCGCGTGGCAAACG CCTTAAAGAAAGCACAATCCCAAAATAAGTCCCTCAAGTCCTTCATTTTTGCTATCAACCTTCAAGTCCCCGGTAAAGACCAACACAGCGCCGTTTTCTA CTTCGCATCGGAAGATCCTCTACCGTCCGATTCCCTCCTATATAGATTCATCAACGGCGATGATGCATTTCGGAATCAACGGTTCAAGATCGTGAACCGG ATTGAAAAGGGTCCATGGGTGGTGAAAAAAACGGTAGGAAATTACAGCGCGTGTTTATTAGGTAAAGCGTTAAATATTAATTACCATAGGGGTGGGAATT ATTTCGAGATTGATGTTGATGTTGGCAGCTCGAAAATTGCTGCGGCAATTTTGCATCTCGCATTGGGGTACACGGCGCATGTCACCATCGATATGGGGTT TGTCGTGGAGGCGCAGACGGAGGAGGAGTTGCCGGAGAGGTTGATTGGGGCAATCAGGGTTTGTCAGATGGAAATGTCGACGGCGCGTGTTGTTGATTCC CCGTCGACGGGTTTGGCGCGTGGGTCGGGGTTTGCTAAGGTGGAGCATCATTTGTCAGGCGATGAAGAGGAGGATTGA
AA sequence Show only first row Show all	>Potri.018G014234.1 pacid=42800771 polypeptide=Potri.018G014234.1.p locus=Potri.018G014234 ID=Potri.018G014234.1.v4.1 annot-version=v4.1 MPKKSPNTEKRIPTERDRGWEREIALKNIMHPTKQKHRSSGPESTTSRSSSTPGWITESINGGSLRHVDLHTGVNGWASPPGDLFSLRSKNYFIKKQKSP SGDYLLSPAGMDWLKSSTKLDNVLARPDNRVANALKKAQSQNKSLKSFIFAINLQVPGKDQHSAVFYFASEDPLPSDSLLYRFINGDDAFRNQRFKIVNR IEKGPWVVKKTVGNYSACLLGKALNINYHRGGNYFEIDVDVGSSKIAAAILHLALGYTAHVTIDMGFVVEAQTEEELPERLIGAIRVCQMEMSTARVVDS PSTGLARGSGFAKVEHHLSGDEEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10750			Protein of unknown function (D...		Potri.018G014234 [exp]	0	1
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.010G056100 [exp]	22.51	0.5431
AT5G26330			Cupredoxin superfamily protein...		Potri.009G136200 [exp]	32.09	0.5377
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	35.66	0.5275
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.010G182100 [exp]	40.14	0.4912
AT3G13600			calmodulin-binding family prot...		Potri.001G005600 [exp]	48.21	0.5063
					Potri.019G037300 [exp]	77.18	0.4944
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.018G101700 [exp]	78.99	0.4587	GER1.3
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.003G014800 [exp]	120.85	0.4545
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	128.71	0.4398
AT5G47550			Cystatin/monellin superfamily ...		Potri.006G014700 [exp]	135.05	0.4150

Compare expression of checked genes

Potri.018G014234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.