Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 407 / 8e-139 Eukaryotic aspartyl protease family protein (.1) AT5G10760 362 / 4e-121 Eukaryotic aspartyl protease family protein (.1) AT1G79720 238 / 8e-73 Eukaryotic aspartyl protease family protein (.1) AT1G01300 233 / 5e-71 Eukaryotic aspartyl protease family protein (.1) AT3G18490 225 / 6e-68 Eukaryotic aspartyl protease family protein (.1) AT1G25510 221 / 2e-66 Eukaryotic aspartyl protease family protein (.1) AT3G61820 216 / 1e-64 Eukaryotic aspartyl protease family protein (.1) AT3G20015 202 / 2e-59 Eukaryotic aspartyl protease family protein (.1) AT3G59080 173 / 3e-48 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 169 / 2e-46 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014900 [exp] 825 / 0 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 679 / 0 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 488 / 1e-170 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 447 / 4e-154 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 428 / 2e-147 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 426 / 6e-146 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 417 / 1e-142 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 349 / 4e-116 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 249 / 4e-77 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042426 [exp] 395 / 1e-133 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 343 / 6e-113 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 228 / 2e-69 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 228 / 5e-69 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 216 / 3e-64 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 202 / 2e-59 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 189 / 2e-54 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 179 / 2e-50 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 177 / 6e-50 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 176 / 7e-49 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.018G014700.1 pacid=42802023 polypeptide=Potri.018G014700.1.p locus=Potri.018G014700 ID=Potri.018G014700.1.v4.1 annot-version=v4.1 ATGGCCACCCCAATTTGTTCCATCTCTCTTCTGAGTGTTTTTCTTCTTCTATTCTCTTTGGAAAAGGGTTATGCTGTTGAAGAAAATGAGGCTACGAAAA GCTATCTTCATATTATTAAAGTCAATTCTCTTCTGCCAACAACTGCCTGCAACCACTCTTCTAAAGTTTCAAACAGTTTATCCCTGGAAGTGGTGCACAG GCATGGCCCATGCATTGGTATAGTGAATCAAGAGAAAGGAGCAGATGCTCCTTCTAACATGGAAATCTTCCTTCGAGACCAAAATCGAGTGGATTCAATT CATGCTAGGCTCTCAAGTCGTGGCATGTTCCCAGAGAAGCAGGCTACAACATTGCCGGTCCAGTCTGGTGCATCTATCGGTGCTGGTGATTATGTTGTTA CTGTGGGTCTCGGCACACCGAAAAAAGAATTTACCCTCATATTCGACACCGGCAGCGATATCACTTGGACTCAATGTGAGCCATGCGTGAAGACTTGCTA CAAACAGAAGGAGCCAAGGTTAAATCCGAGCACGTCTACTTCATACAAGAACATTTCGTGTTCCTCGGCGTTGTGCAAATTAGTCGCGTCAGAAGGTAGC CAAAGTTGTTCTTCTTCGACATGCCTTTACCAGGTGCAATATGGAGACGGCTCCTACTCAATCGGGTTTTTTGCTACAGAAACATTAACCCTTTCATCAT CAAATGTGTTCAAGAACTTCTTATTTGGGTGCGGGCAACAAAACAATGGCCTATTTGGAGGAGCAGCCGGTTTGCTGGGACTTGGTCGGACCAAGTTAGC CTTGCCATCACAAACTGCTAAAACATACAAAAAGCTCTTCTCTTATTGCCTACCGGCATCATCCAGCTCCAAAGGTTACCTCAGTCTTGGTGGACAAGTC TCTAAGTCTGTGAAATTCACTCCTTTGTCTGCGGACTTTGACTCGACGCCTTTTTACGGCCTGGACATAACCGGACTTAGTGTTGGAGGGCGCCAGCTAT CAATAGATGAATCGGCTTTTTCAGCTGGAACCGTTATTGACTCTGGCACGGTCATCACGAGACTGTCTCCGACAGCATACTCCGAGCTCAGCTCAGCATT TCAAAATTTGATGACAGATTATCCTTCGACAAGTGGGTATTCTATTTTCGATACGTGCTATGATTTTAGTAAATATGACACGGTAAGGATACCCAAGGTT GGTGTGACCTTCAAAGGCGGAGTCGAGATGGATATTGATGTGTCAGGGATTTTGTATCCAGTGAACGGTTTGAAGAAGGTTTGCCTAGCTTTCGCAGGAA ATGATGATGATAGTGATACATCAATTTTTGGAAATGTTCAGCAAAGGACTTATCAAGTGGTCTATGATGGTGCAAAAGGAAGGGTTGGATTTGCCCCTGG TGGTTGTAGCTGA
AA sequence Show only first row Show all	>Potri.018G014700.1 pacid=42802023 polypeptide=Potri.018G014700.1.p locus=Potri.018G014700 ID=Potri.018G014700.1.v4.1 annot-version=v4.1 MATPICSISLLSVFLLLFSLEKGYAVEENEATKSYLHIIKVNSLLPTTACNHSSKVSNSLSLEVVHRHGPCIGIVNQEKGADAPSNMEIFLRDQNRVDSI HARLSSRGMFPEKQATTLPVQSGASIGAGDYVVTVGLGTPKKEFTLIFDTGSDITWTQCEPCVKTCYKQKEPRLNPSTSTSYKNISCSSALCKLVASEGS QSCSSSTCLYQVQYGDGSYSIGFFATETLTLSSSNVFKNFLFGCGQQNNGLFGGAAGLLGLGRTKLALPSQTAKTYKKLFSYCLPASSSSKGYLSLGGQV SKSVKFTPLSADFDSTPFYGLDITGLSVGGRQLSIDESAFSAGTVIDSGTVITRLSPTAYSELSSAFQNLMTDYPSTSGYSIFDTCYDFSKYDTVRIPKV GVTFKGGVEMDIDVSGILYPVNGLKKVCLAFAGNDDDSDTSIFGNVQQRTYQVVYDGAKGRVGFAPGGCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014700 [exp]	0	1
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014900 [exp]	1.00	0.9989
AT4G30460			glycine-rich protein (.1)		Potri.006G178200 [exp]	4.24	0.9683
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.016G057400 [exp]	4.89	0.9668
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G179300 [exp]	8.06	0.9613
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	8.48	0.9510
					Potri.008G028200 [exp]	8.83	0.9287
					Potri.008G028050 [exp]	10.58	0.9272
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031850 [exp]	10.81	0.9360
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G165700 [exp]	11.66	0.9435	CHI3.11
AT3G53980			Bifunctional inhibitor/lipid-t...		Potri.016G104300 [exp]	15.49	0.9296

Compare expression of checked genes

Potri.018G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.