Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 312 / 1e-101 Eukaryotic aspartyl protease family protein (.1) AT5G10760 280 / 2e-89 Eukaryotic aspartyl protease family protein (.1) AT1G79720 228 / 3e-69 Eukaryotic aspartyl protease family protein (.1) AT3G61820 198 / 8e-58 Eukaryotic aspartyl protease family protein (.1) AT1G01300 197 / 2e-57 Eukaryotic aspartyl protease family protein (.1) AT3G20015 196 / 2e-57 Eukaryotic aspartyl protease family protein (.1) AT3G18490 183 / 4e-52 Eukaryotic aspartyl protease family protein (.1) AT2G03200 175 / 2e-49 Eukaryotic aspartyl protease family protein (.1) AT1G64830 166 / 2e-46 Eukaryotic aspartyl protease family protein (.1) AT1G25510 165 / 1e-45 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232600 [exp] 402 / 1e-136 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 378 / 1e-127 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 377 / 4e-127 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 373 / 1e-125 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 371 / 7e-125 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 367 / 5e-123 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 341 / 2e-113 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 330 / 1e-108 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 229 / 1e-68 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042426 [exp] 315 / 5e-103 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 273 / 9e-86 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 229 / 1e-69 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 219 / 1e-65 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 197 / 7e-58 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 182 / 2e-50 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 175 / 2e-49 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026906 [exp] 163 / 1e-45 AT5G10760 182 / 9e-53 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 164 / 2e-45 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 165 / 3e-45 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G014800.1 pacid=42801039 polypeptide=Potri.018G014800.1.p locus=Potri.018G014800 ID=Potri.018G014800.1.v4.1 annot-version=v4.1 ATGTCTTCTAAATCACTACTTTCTTTTGTGATTTATGGTTTTCTTCTTCTTTCCCCTTGTAACTCTTTGAAGGACAATGCCGATGAAGGAACGAGAGCAT ATTTTCATACTCTCAAAATCAGTTCTCTCCCATCAACAGAAGTCTGCAAGGAATCTTCCAAAGCTCTCAACGAGGGTTCATCATCCCTAAAATTAGTACA CAGGTTCGGTCCATGCAATCCACACAGAACATCAACTGCTCCAGCATCATCCTTCAACGAAATCCTCCGTCGAGACAAACTTCGAGTGGACTCAATTATT CAGGCCCGGCGTTCAATGAACTTGACCAGCAGTGTTGAGCACATGAAGAGTAGTGTCCCGTTCTATGGTCTATCCAAAATCACTGCAAGTGACTATATTG TCAACGTTGGAATCGGCACGCCCAAGAAGGAAATGCCACTTATATTTGACACAGGCAGTGGTCTCATTTGGACTCAATGTAAGCCGTGCAAGGCTTGCTA TCCAAAAGTACCTGTGTTCGATCCAACCAAGTCAGCTTCATTCAAAGGCCTTCCATGTTCCTCAAAGCTATGCCAATCAATCAGGCAAGGATGCTCCTCT CCGAAGTGCACCTACTTAACTGCATATGTAGACAACAGCAGCTCCACAGGAACTTTGGCCACCGAAACAATATCCTTTAGCCATTTAAAGTACGACTTCA AGAACATTTTGATTGGATGCAGCGATCAAGTATCTGGTGAATCACTTGGAGAATCTGGTATAATGGGACTAAACCGCTCACCTATATCTTTAGCATCACA AACTGCTAATATATACGACAAACTCTTCTCTTATTGTATACCGTCAACTCCTGGCTCAACTGGTCATCTTACTTTCGGCGGCAAAGTGCCGAATGATGTC AGATTCTCCCCAGTATCTAAAACAGCACCATCTTCGGACTACGACATCAAAATGACTGGAATTAGTGTTGGAGGCCGTAAACTATTGATAGATGCATCGG CTTTTAAGATTGCTAGCACCATCGACTCTGGTGCAGTGCTCACTCGGCTGCCTCCGAAGGCATACTCGGCACTGAGGTCAGTGTTCCGAGAAATGATGAA AGGTTATCCTTTGTTGGACCAAGATGACTTTCTAGACACATGCTATGACTTCAGTAATTATAGCACGGTTGCAATACCTTCGATTAGTGTGTTCTTCGAA GGTGGCGTGGAGATGGATATCGATGTTTCGGGGATCATGTGGCAGGTTCCAGGGAGCAAGGTGTACTGCTTGGCATTTGCGGAATTGGATGACGAAGTTT CAATCTTTGGGAATTTTCAGCAAAAGACTTACACAGTAGTCTTTGATGGTGCGAAGGAAAGGATTGGGTTTGCCCCCGGTGGCTGTGACTAA
AA sequence Show only first row Show all	>Potri.018G014800.1 pacid=42801039 polypeptide=Potri.018G014800.1.p locus=Potri.018G014800 ID=Potri.018G014800.1.v4.1 annot-version=v4.1 MSSKSLLSFVIYGFLLLSPCNSLKDNADEGTRAYFHTLKISSLPSTEVCKESSKALNEGSSSLKLVHRFGPCNPHRTSTAPASSFNEILRRDKLRVDSII QARRSMNLTSSVEHMKSSVPFYGLSKITASDYIVNVGIGTPKKEMPLIFDTGSGLIWTQCKPCKACYPKVPVFDPTKSASFKGLPCSSKLCQSIRQGCSS PKCTYLTAYVDNSSSTGTLATETISFSHLKYDFKNILIGCSDQVSGESLGESGIMGLNRSPISLASQTANIYDKLFSYCIPSTPGSTGHLTFGGKVPNDV RFSPVSKTAPSSDYDIKMTGISVGGRKLLIDASAFKIASTIDSGAVLTRLPPKAYSALRSVFREMMKGYPLLDQDDFLDTCYDFSNYSTVAIPSISVFFE GGVEMDIDVSGIMWQVPGSKVYCLAFAELDDEVSIFGNFQQKTYTVVFDGAKERIGFAPGGCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014800 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	2.44	0.9090
					Potri.001G049700 [exp]	7.74	0.8769
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	8.66	0.8870
					Potri.015G068800 [exp]	15.49	0.8278
AT3G50160			Plant protein of unknown funct...		Potri.015G019000 [exp]	15.68	0.8938
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.009G148900 [exp]	15.87	0.8695	Pt-PSK6.1
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108501 [exp]	19.62	0.8404
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050600 [exp]	20.09	0.8877
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	20.12	0.8643
					Potri.010G190900 [exp]	22.80	0.8596

Compare expression of checked genes

Potri.018G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.