Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EIF3.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27640 1166 / 0 ATTIF3B1, ATEIF3B-1, EIF3B-1, TIF3B1 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) AT5G25780 1153 / 0 ATEIF3B-2, EIF3B-2 eukaryotic translation initiation factor 3B-2 (.1) AT1G49015 221 / 2e-67 DPP6 N-terminal domain-like protein (.1) AT1G73180 105 / 1e-23 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267500 [exp] 1323 / 0 AT5G27640 1087 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.013G126300 [exp] 99 / 2e-21 AT1G73180 703 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026904 [exp] 1204 / 0 AT5G27640 1167 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10020098 [exp] 1135 / 0 AT5G27640 1108 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10016562 [exp] 1127 / 0 AT5G27640 1072 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10040831 [exp] 764 / 0 AT5G27640 697 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10004803 [exp] 89 / 3e-18 AT1G73180 623 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) Lus10021720 [exp] 44 / 0.0008 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038840 [exp] 42 / 0.0008 AT3G16380 62 / 2e-11 poly(A) binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0186 [poplar] [flax] Beta_propeller PF08662 [poplar] [flax] eIF2A Eukaryotic translation initiation factor eIF2A
Representative CDS sequence Show only first row Show all	>Potri.018G015200.1 pacid=42800554 polypeptide=Potri.018G015200.1.p locus=Potri.018G015200 ID=Potri.018G015200.1.v4.1 annot-version=v4.1 ATGGGAGAAATATCACTGAACGAATTAGAAGCGAGAGCCGATGCCGCTGGTATCGATCTCTCGCAAATTGACCTCGATTCAATCCAACTTCCTCCTGGCG ATGATTTTGGCATTATTAGTGATGATGAAGATGTCTATCAAGAAGAACAGATGGATTTTGACTATGGGTTAGGGAACACTATTGTAGTCGATAATCTTCC AGTTGTTCCAAAGGAAAAGTTTGATAAGCTTGAAGGAGTTGTCCGTAAGATCTATAGTCAGATTGGTGTTATTAAGGAGGATGGCCTTTGGATGCCTGTT GATCCTGACACTCATAAAACTTTGGGATACTGTTTCATCGAATACAACACTCCACAGGAAGCTGAGCTAGCTAAGGAGAAGACAAATGGGTACAAGCTTG ACAGAGCCCATATTTTTGCTGTCAACATGATTGAAGATTTCAACAGATTTATGAAAGTTCCTGATGAATGGGCACCTCCAGAGATAAGGCCATATGTTCC TGGGGAGAATCTTCAAAACTGGCTCACTGATGAAAAGGCTCGAGATCAGTTTGTGATTCGTGCTGGCTCAGATACCGAGGTGTTCTGGAATGATGCAAGA CATTTGAAGCCTGACCCTGTTTACAAGCGTGCTTATTGGACCGAGAGTTATGTGCAGTGGTCCCCCCTTGGGACATACCTGGCAACAGTTCATAGGCAGG GTGCTGCAGTTTGGGGTGGTGCGAGTACCTTTAATCGGCTAATGCGTTATGCTCATCCTCAGGTTAAACTCATTGATTTTTCCCCTGGTGAGAAATATTT GGTAACCTACAGCAGCCATGAACCAAGCAATCCTCGTGATGCTAATAGGGTTGTGATAAATATTTTTGATGTGAGAACTGGCAAAGCAATGAGAGATTTT AAGGGCAGTGCTGATGAATTTGCTATTGGAGGAACTGGTGGCGTTGCAGGAGTGTCTTGGCCTGTTTTCAAGTGGGGTGGTGGGAAGGATGACAAATATT TTGCCAAAATTGGGAAGAACATGATTTCTGTGTATGAAACTGAGTCATTCAGCCTTGTAGACAAAAAATCCTTGAAGGCTGAAAGTGTGGTGGACTTTAG TTGGTCACCAACAGATCCAATTCTTGCTCTCTTTGTTCCTGAACTTGGTGGCGGGAATCAACCTGCCAGGGTGAGCCTCATTCAAATTCCAAGTAAAGAG GAATTGCGACAAAAGAACCTTTTCAGTGTCAGTGACTGTAAGCTGTATTGGCAGAGTAATGGGGACTACCTTGCTGTGAAGGTGGATAGGTATACAAAGA CTAAGAAAAGCACATATACAGGATTTGAGCTTTTCCGTATAAAAGAGCGGGACATACCAATTGAGGTATTGGAACTAGACAACAAGAACGACAAGATTAT TGCCTTTGCTTGGGAGCCAAAGGGCCATAGATTTGCTGTCATTCATGGTGACAGCCCCAGGCCTGATGTAAGCTTTTACTCAATGAGGAGTGCTCATAAT ACTGGTCGGGTTTCAAAGCTCACTACTCTAAAGGGCAAACAAGCAAATGCTCTTTTCTGGTCACCGTCTGGTCGTTACATAATACTTGCAGGACTTAAAG GTTTCAATGGTCAGTTGGAATTCTACAATGTTGATGAGCTTGAGACAATGGCAACAGCTGAGCATTTTACGGCAACAGATATTGAATGGGATCCCACTGG AAGGTATGTTGCAACTTCAGTGACTTCAGTTCATCATGAAATGGAAAATGGCTTCAACATTTGGTCTTTCAATGGAAAGCTACTTTATCGGATACTGAAG GATCATTTCTTCCAGTTCTTGTGGCGCCCAAGGCCAGCATCCTTCTTGAGTCCAGAAAAGGAGGAAGAGATTGCTAAGAATTTGAAGAAGTATAGCAAGA AGTATGAGGCAGAGGACCAGGATGTGTCTTTGTTATTGAGTGAGCAGGACCGTGAGAAGAGGAGGATGTTGAAGGATGAATGGGAGAAGTGGGTGAGTGA ATGGAAGAGGTTGCATGAAGAGGAAAAATTGCTGAGGCAGATGTTAAGGGATGGAGAAGCTAGTGATGAAGAGGAAGAGTATGAGGCAAAAGAAGTTGAA GTTGAAGAATTGTTAGATGTTTCCGAGGAAGTTCTTTTTGAATTCGGACAGGAGTAA
AA sequence Show only first row Show all	>Potri.018G015200.1 pacid=42800554 polypeptide=Potri.018G015200.1.p locus=Potri.018G015200 ID=Potri.018G015200.1.v4.1 annot-version=v4.1 MGEISLNELEARADAAGIDLSQIDLDSIQLPPGDDFGIISDDEDVYQEEQMDFDYGLGNTIVVDNLPVVPKEKFDKLEGVVRKIYSQIGVIKEDGLWMPV DPDTHKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMIEDFNRFMKVPDEWAPPEIRPYVPGENLQNWLTDEKARDQFVIRAGSDTEVFWNDAR HLKPDPVYKRAYWTESYVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKAMRDF KGSADEFAIGGTGGVAGVSWPVFKWGGGKDDKYFAKIGKNMISVYETESFSLVDKKSLKAESVVDFSWSPTDPILALFVPELGGGNQPARVSLIQIPSKE ELRQKNLFSVSDCKLYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDVSFYSMRSAHN TGRVSKLTTLKGKQANALFWSPSGRYIILAGLKGFNGQLEFYNVDELETMATAEHFTATDIEWDPTGRYVATSVTSVHHEMENGFNIWSFNGKLLYRILK DHFFQFLWRPRPASFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRRMLKDEWEKWVSEWKRLHEEEKLLRQMLRDGEASDEEEEYEAKEVE VEELLDVSEEVLFEFGQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.018G015200 [exp]	0	1	EIF3.5
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.005G245100 [exp]	1.00	0.8925	TIF3.9
AT1G80620			S15/NS1, RNA-binding protein (...		Potri.003G178800 [exp]	7.34	0.8271
AT3G62120			Class II aaRS and biotin synth...		Potri.014G112400 [exp]	7.74	0.8306
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	9.16	0.8668
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	9.48	0.8490	NOP56.1
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	11.95	0.8410
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G100800 [exp]	12.48	0.8634
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.006G166000 [exp]	15.19	0.8488
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.006G148600 [exp]	20.63	0.7767	NFA902
AT5G27120			NOP56-like pre RNA processing ...		Potri.005G045600 [exp]	20.83	0.8100

Compare expression of checked genes

Potri.018G015200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.