Plant FIBer expression Database

Potri.018G015300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31770 546 / 0 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
AT5G56900 45 / 6e-05 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020096
[exp]
628 / 0 AT4G31770 561 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
Lus10026902
[exp]
613 / 0 AT4G31770 551 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
CL0163 PF05011 DBR1 Lariat debranching enzyme, C-terminal domain
Representative CDS sequence
>Potri.018G015300.2 pacid=42801796 polypeptide=Potri.018G015300.2.p locus=Potri.018G015300 ID=Potri.018G015300.2.v4.1 annot-version=v4.1
ATGAAGATAGCAATAGAAGGATGCATGCATGGCGACCTAGACAAAGTCTACCAAACACTCAAACTCATCGAATCTCAAAACGGAACCAAGATCGACCTCC
TCCTCTGCTGCGGCGATTTTCAGGCAGTGAGAAACGAGAGAGACATGGAGAGCTTGAACGTGCCGTTAAAATATCGGGAGATGAAGTCGTTTTGGAAGTA
CTATTCAGGCCGAGAAATTGCTCCCGTTCCTACGATATTTATCGGTGGAAATCATGAAGCTTCTAATTACTTATGGGAATTGTGTTATGGAGGATATGCG
GCGCCTAATATATATTTTTTGGGATTTGCTGGTGTGATTAAGTTTGGGAATATTAGAATTGGTGGACTTTCCGGTATTTATAATGCACGTAATTATCGTA
CAGGACATCATGAGAGGGCGCCATACAATGAGAGCAGTATAAGATCAGTGTATCATGTTCGTGAGTATGATGTGCATAAACTGATGCAAGTTGAGGAACC
GATTGATATTTTTCTTTCACATGATTGGCCTGTTGGGATAACTGATTGTGGGAATTGGAAGCAGCTTGTTCGGTATAAACCTCATTTTGAGAAAGAGATT
CAAGAAAAATCTCTTGGAAGTAAAGCTGCTGCTCAACTGCTGGAAAAATTGAGACCTGCATATTGGTTTTCTGCTCATCTGCACTGCAAATTTGCCGCTG
TTGTTCAGCATGGTGAAGGTGGCCCCTTGACAAAATTTCTTGCACTTGACAAGTGTCTTCCGCGTCGCAAATTTTTACAGGTTATTGAAATAGAATCGGA
ACCTGGACCTTATGAAATTCAATATGATGAAGAATGGCTGGCCATAACAAGGAAGTTCAACTCTATCTTTCCATTAACGTTTAAAAATGCAAATTTTGGG
GCTACGCAGCTTGAAATGGAAGATTGTCGGCAATTTGTCAGTAGCAGGCTACAAGAAAGAGGGACCAAACCATTTGAATTTACACAGACTGCTCCACCTT
TTGATCCCACTCAATCAGGCCCAAATGGTTCCTTTTCTGGATGTCCAAGGAATCCTCAAACAGAATCATTGTTGCAGCTTCTGGAACTTCCATATCTTTT
GGACAGCACATCAGAATCAAGAGAAGGAAGATATAGTCCTAGTGCTTCCCAGTTAATTCAGAGAGGTTCTTTTGTTCATAATAGTGAAGAAATTCCTATT
GATGATGTGGATGAATCAGAACTTGAAGAAGCTGATGATGTGGACACTAGAAAAGAGTAG
AA sequence
>Potri.018G015300.2 pacid=42801796 polypeptide=Potri.018G015300.2.p locus=Potri.018G015300 ID=Potri.018G015300.2.v4.1 annot-version=v4.1
MKIAIEGCMHGDLDKVYQTLKLIESQNGTKIDLLLCCGDFQAVRNERDMESLNVPLKYREMKSFWKYYSGREIAPVPTIFIGGNHEASNYLWELCYGGYA
APNIYFLGFAGVIKFGNIRIGGLSGIYNARNYRTGHHERAPYNESSIRSVYHVREYDVHKLMQVEEPIDIFLSHDWPVGITDCGNWKQLVRYKPHFEKEI
QEKSLGSKAAAQLLEKLRPAYWFSAHLHCKFAAVVQHGEGGPLTKFLALDKCLPRRKFLQVIEIESEPGPYEIQYDEEWLAITRKFNSIFPLTFKNANFG
ATQLEMEDCRQFVSSRLQERGTKPFEFTQTAPPFDPTQSGPNGSFSGCPRNPQTESLLQLLELPYLLDSTSESREGRYSPSASQLIQRGSFVHNSEEIPI
DDVDESELEEADDVDTRKE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31770 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHI... Potri.018G015300
[exp]
0 1
AT4G24500 hydroxyproline-rich glycoprote... Potri.002G111500
[exp]
2.23 0.8680
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.001G171100
[exp]
2.23 0.8854
AT3G06270 Protein phosphatase 2C family ... Potri.010G028300
[exp]
3.46 0.8686
AT2G41500 EMB2776, LIS LACHESIS, WD-40 repeat family ... Potri.006G045800
[exp]
6.00 0.8714
AT5G58003 CPL4 C-terminal domain phosphatase-... Potri.018G108300
[exp]
6.32 0.8542
AT1G26110 DCP5 decapping 5 (.1.2) Potri.017G111500
[exp]
7.07 0.8522
AT1G50620 RING/FYVE/PHD zinc finger supe... Potri.001G358900
[exp]
7.74 0.8663
AT1G76900 TUB AtTLP1 tubby like protein 1 (.1.2) Potri.005G192400
[exp]
10.48 0.8319
AT1G19010 unknown protein Potri.001G350000
[exp]
12.48 0.8285
AT3G03380 DEG7, DEGP7 degradation of periplasmic pro... Potri.017G128300
[exp]
12.84 0.8435

Potri.018G015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.