Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24820 778 / 0 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT3G44880 176 / 2e-48 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT4G25650 158 / 5e-42 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT1G44446 90 / 9e-19 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267300 [exp] 850 / 0 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.003G219000 [exp] 184 / 2e-51 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 184 / 3e-51 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 182 / 9e-51 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 174 / 2e-47 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 161 / 3e-43 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 161 / 5e-43 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 154 / 2e-40 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 130 / 3e-32 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042424 [exp] 768 / 0 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10026246 [exp] 753 / 0 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10025414 [exp] 199 / 1e-56 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 180 / 8e-50 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 178 / 5e-49 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 176 / 2e-48 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 173 / 3e-47 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 173 / 3e-47 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10041348 [exp] 171 / 2e-46 AT3G44880 785 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Lus10015284 [exp] 168 / 1e-45 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [poplar] [flax] ISP-domain PF00355 [poplar] [flax] Rieske Rieske [2Fe-2S] domain CL0209 [poplar] [flax] Bet_v_1_like PF08417 [poplar] [flax] PaO Pheophorbide a oxygenase
Representative CDS sequence Show only first row Show all	>Potri.018G015700.1 pacid=42801015 polypeptide=Potri.018G015700.1.p locus=Potri.018G015700 ID=Potri.018G015700.1.v4.1 annot-version=v4.1 ATGGCATTATCACTGCACCTATCTCTCTCCCACAAAAATTTCTCGAACCCCTTTGCTTCCTTCACCCCCACCACTAAACTACCGACAACAATACACATAA ACAGCCACCTGCTCAAATCAATACACTCAAAGCCTTACTACATAAAGAAGTGTCATGCAGTTGCAGATGCCCCAACGGCCATTCCTCCTTCACTTGATGC AGAAGATGATGCTCATGGGGTTCTTATCGGTCCCTCTAGTGAGGAGGAAAGGAGAGGGGATGGAGCGGTGGTAGACTATAATTGGACTGAAGAGTGGTAC CCACTTTACCTCACCAAGGATGTGCCAGATGATGCACCTCTAGGTCTTAATGTATTTGATAAGCAGTTAGTGTTGTATAAAGATGGCCAAGGTGAGCTGC GATGTCACGAAGATCGGTGCCCTCACAGGTTGGCGAAACTATCAGAAGGTCAGTTGATCGACGGAAGACTTGAATGTCTATACCATGGTTGGCAGTTTGA AGGGGAGGGAAAATGTGTAAAAATACCTCAGCTTCCTGCAAATGCTAAAATTCCTCAGTCAGCTTGTGTTAAGACATATGAGGTGAAGGAATCACAAGGA GTTGTTTGGGTATGGATGTCACTAAAGACACCACCAAACTTTAAGAAGGTTCCCTGGTTTGAGAACTTTGCCAGGCCAGGATTTCAAGATACCTCAACCA TTCATGAGCTTCCATATGATCACTCCATACTGCTTGAAAACCTCATGGATCCGGCACACATTCCAATCTCACATGATAGGACAGACTGGACTTCCAAAAG GGAGGATGCCCAGGCACTGCGATTTGAGGTGACTGAACGCACCCATCGAGGTTTTGCAGGGAGGTGGGGTAAGGAAAAGGATCAAAAACTGCGAAGCTTC TTACGGTTTCAAGCTCCGTGTGTTCTATCCAACGACATAGAATTTGCAGATGAGAAGGGGGTGACACAGTACTTCACTGGCCTTTTTCTTTGCAGACCAA CCGGACAAGGAAAATCCATGATCATTGTCAGGTTTGGAGCAACAAAAAGACCTCAAATGGCAAAGGTGATCCCTAAATGGTACTTCCATCAAAATGCGTG CAAAATCTTTGAGCAAGACATGGGATTTCTGTCATCACAGAATGAAGTTTTAATGAAAGAAAAGGTTCCAACAAAGGAATTGTACATTAATTTGAAGTCA TCAGATACATGGGTAGCTGAATACAGGAAATGGATGGACAAAGTTGGACATGGAATGCCTTATTATTTTGGCCACAACACCATTTCTTTGCCAGAAGTAC CTGCTGTTGTAGAACATGCACCAGCTGGTCTTGTTGCTGGAGTTTCAGCTTCTTCACCAGCAAAAGGTGGGATTGGAACAATGCACGCACCCAATGTGAA CAACCGATATTTCAGACACGTAATTCATTGCAAGGGATGCACTAGTGTAGTAAAAAATTTCCAAGCTTGGAAAAATGCCCTCTCTGCAATTTCTGTTGCA TTGACTGCATTGGCCATTCTAGCATCTGGAAGGCAATGGAAGACCTTTCTCTTGGTATCAGCAAGTCTGTGCTTAGCTGGAGTTTATGCATGCTCAACTG CAATTGCAATGAACACAACAAACTTCATAAGAACACACAGGAGATTGTAA
AA sequence Show only first row Show all	>Potri.018G015700.1 pacid=42801015 polypeptide=Potri.018G015700.1.p locus=Potri.018G015700 ID=Potri.018G015700.1.v4.1 annot-version=v4.1 MALSLHLSLSHKNFSNPFASFTPTTKLPTTIHINSHLLKSIHSKPYYIKKCHAVADAPTAIPPSLDAEDDAHGVLIGPSSEEERRGDGAVVDYNWTEEWY PLYLTKDVPDDAPLGLNVFDKQLVLYKDGQGELRCHEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPANAKIPQSACVKTYEVKESQG VVWVWMSLKTPPNFKKVPWFENFARPGFQDTSTIHELPYDHSILLENLMDPAHIPISHDRTDWTSKREDAQALRFEVTERTHRGFAGRWGKEKDQKLRSF LRFQAPCVLSNDIEFADEKGVTQYFTGLFLCRPTGQGKSMIIVRFGATKRPQMAKVIPKWYFHQNACKIFEQDMGFLSSQNEVLMKEKVPTKELYINLKS SDTWVAEYRKWMDKVGHGMPYYFGHNTISLPEVPAVVEHAPAGLVAGVSASSPAKGGIGTMHAPNVNNRYFRHVIHCKGCTSVVKNFQAWKNALSAISVA LTALAILASGRQWKTFLLVSASLCLAGVYACSTAIAMNTTNFIRTHRRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	1.00	0.9842
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	1.41	0.9820
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Potri.013G109000 [exp]	2.00	0.9777
AT2G04039			unknown protein		Potri.014G172800 [exp]	2.44	0.9778
AT5G25840			Protein of unknown function (D...		Potri.018G045600 [exp]	2.64	0.9652
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	3.16	0.9741
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	4.69	0.9600	HY5.1
AT5G52190			Sugar isomerase (SIS) family p...		Potri.015G140600 [exp]	5.65	0.9642
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	8.06	0.9592
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	8.36	0.9578

Compare expression of checked genes

Potri.018G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.