Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24830 420 / 4e-143 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT3G09850 47 / 3e-05 D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113600 [exp] 54 / 3e-07 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 51 / 1e-06 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 44 / 0.0002 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026901 [exp] 460 / 3e-158 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10020095 [exp] 457 / 6e-157 AT2G24830 471 / 8e-163 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 56 / 7e-08 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10036327 [exp] 50 / 3e-06 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10002252 [exp] 47 / 3e-05 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 47 / 3e-05 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.018G016200.1 pacid=42801999 polypeptide=Potri.018G016200.1.p locus=Potri.018G016200 ID=Potri.018G016200.1.v4.1 annot-version=v4.1 ATGGCAGACGAGGAAGAAGAGAGAGCTCTAGAGAACCAACTGGAACTACAGTTTCTAGAGCAGAAAGATTCATTAGCTGCCTTGAATGATGCTCTTGCCT CTGACCCATCAAATCCTGAGCTTCTCTCTGTTCAAGAGGAGCTTCTTCAGGTCATTAAAGATGTAGAGGAGGGACTCCTGCATCTAAAACGTGCACGGTT ATTACGAGAGGCAGATTCAGTATTACATGCTTCCTACCATACTGTAGAGGATGTCAAGGCTGAGCCTCTTGATCCAGTTCATGTTGAACCAGAACCACTA GAGGACCAGTGTTACTCTGTAGGATCAAAATGCAGATTCCGTCATGTTGATGGACGCTGGTACAATGGTCAAATTATTGAGTTGGTTTGTTCTGATACTG CGAAGATCGCTTTCCTCACTCCTATATCAGAAAATATGCTGATATGCAAGTTTTTTCTGCAAGAACGATGTCGATTTGGCACTAGCTGCCGCTTATCACA TGGGGTTGATGTGTCATTATCCTCCCTGAAGAATTATGTGCCAACAATGTGGGATCAGTCATTGGTGGGATCCAGTATCTGGGCACTTTCAGATAGTAAT GTTGGCATATGGAGGAAAGCTGAACTTGAATCTTGGGATAATGAACACAGAGTAGGGCAGGTTGTTTTCCATGATGGTGGAAGCTCTGCAAAGCTTGGGA GTGAAGCTATGACGATATCTGAGTATGCTTTGATGAGTGATGAAGAGGAAACTGATTCAAGCTCAGAAGGATCTGATTCTAGCGATTATGACGAAGAGAG TGCAGAAGGTTTAGGGTTTCTTGAGAGCACAAACTTACAAAGAGGTATCCAAACAGGAACTGCCATATTTGCGACGTGGGAAAATCATACACGGGGCATA GCTTCCAAGATGATGGCAAATATGGGTTATCGTGAAGGGATGGGATTAGGTGCATCGGGTCAGGGCATGCTGGACCCTATCCCTGTGAAGGTCCTCCCAC CAAAGCAATCACTTGATCATGCTCTGGAGTCTCAAAAAGAGGGGATCAAAGATAATCATGGGAAGAAGAGAAGCAGGGGTGGGAAAAGAAAACGTGAGAA GAAGTTTGCAGCAGCAGCTAGGGCAGCAAAAGCTAAAGAGGAAACGAGACCAGATGTTTTTACTCTTATCAATAATCAACTTGCTGGGCACAACAAAGCT CTGAACAGCGAGTCAGCTAAGAAGCAGAAAAGTAAAGGCTCAGAGGAGAAGAAAGTCAATAGGCGAGATCTACTTGCTTATGATGATGAGATTAAGGAGT TGAGGATACGTGTGGAGAAGCTTGAAGACATGGCAAACAGAAACAAAAAAGAGAAGGTGGTTTATGAGTCTGCTATGAGAAAATTAAACGAGACTCGCAT AACTTTGGCCAAAGCTGAGGCTTCTAAAGCATCTGCATCTAATGCTATTACCGGTAGAGAAAAAGAGAAGAAATGGCTTAAGTTTTGA
AA sequence Show only first row Show all	>Potri.018G016200.1 pacid=42801999 polypeptide=Potri.018G016200.1.p locus=Potri.018G016200 ID=Potri.018G016200.1.v4.1 annot-version=v4.1 MADEEEERALENQLELQFLEQKDSLAALNDALASDPSNPELLSVQEELLQVIKDVEEGLLHLKRARLLREADSVLHASYHTVEDVKAEPLDPVHVEPEPL EDQCYSVGSKCRFRHVDGRWYNGQIIELVCSDTAKIAFLTPISENMLICKFFLQERCRFGTSCRLSHGVDVSLSSLKNYVPTMWDQSLVGSSIWALSDSN VGIWRKAELESWDNEHRVGQVVFHDGGSSAKLGSEAMTISEYALMSDEEETDSSSEGSDSSDYDEESAEGLGFLESTNLQRGIQTGTAIFATWENHTRGI ASKMMANMGYREGMGLGASGQGMLDPIPVKVLPPKQSLDHALESQKEGIKDNHGKKRSRGGKRKREKKFAAAARAAKAKEETRPDVFTLINNQLAGHNKA LNSESAKKQKSKGSEEKKVNRRDLLAYDDEIKELRIRVEKLEDMANRNKKEKVVYESAMRKLNETRITLAKAEASKASASNAITGREKEKKWLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	0	1
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.006G185300 [exp]	1.41	0.7646
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	8.48	0.7624
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	12.44	0.7566
AT2G23090			Uncharacterised protein family...		Potri.009G090800 [exp]	15.90	0.7665
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	16.00	0.6876
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	16.12	0.7028
AT1G71910			unknown protein		Potri.013G114000 [exp]	17.60	0.7378
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	18.76	0.7251
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G132800 [exp]	19.59	0.6758
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Potri.010G115700 [exp]	20.97	0.6812

Compare expression of checked genes

Potri.018G016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.