Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24860 164 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT3G47650 39 / 0.0003 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT1G75690 39 / 0.0005 LQY1 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266800 [exp] 204 / 1e-68 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.005G237800 [exp] 44 / 6e-06 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G068300 [exp] 41 / 4e-05 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 41 / 6e-05 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.002G023600 [exp] 40 / 0.0002 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.019G040400 [exp] 39 / 0.0004 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066000 [exp] 39 / 0.0004 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026899 [exp] 171 / 2e-55 AT2G24860 154 / 6e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10020093 [exp] 59 / 6e-11 AT2G24860 57 / 2e-10 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 46 / 7e-07 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10019417 [exp] 41 / 9e-05 AT3G47650 128 / 2e-38 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 40 / 0.0001 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10030091 [exp] 39 / 0.0003 AT3G47650 129 / 3e-39 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002040 [exp] 39 / 0.0003 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G016400.2 pacid=42800655 polypeptide=Potri.018G016400.2.p locus=Potri.018G016400 ID=Potri.018G016400.2.v4.1 annot-version=v4.1 ATGGATAACAACATGAGCTGCATAAGAAGAGCAGGAGTTGGTGTTGTAGTTGTACCTCATGGTACAAGTAGTAGAAGCTTAAGGATGGTTCGTGGGGTTG TAGTTGTATCTCTTGGTTCAAGTAGTAGAAGCTCAAGGAGGGGTTGTGGGGTTGTTAGAGCTTCAATGGTAGATTCTTATGAGAGTTATTCTGATTTTGT TAAGAGGATGGAACAAGCTTGGTTAATCTCACAGCAACCAAGGCCAGTTGCGTGTACTTCTTGCGATTCAAATGGGCAAGTTGAATGCCAATGGTGTAGG GGTACAGGATTCTTCATTCTTGGCGATAACATGCTCTGCCAAGTTCCTTCCAGAAATACCACTTGTGTTATTTGTGCTGGAAAGGGGTCAATGTGCTGCT CTGATTGTAAAGGAACTGGCTTTCGAGCCAGGTGGTTGGGGAAGCCTCCCATCTCCAAGTAG
AA sequence Show only first row Show all	>Potri.018G016400.2 pacid=42800655 polypeptide=Potri.018G016400.2.p locus=Potri.018G016400 ID=Potri.018G016400.2.v4.1 annot-version=v4.1 MDNNMSCIRRAGVGVVVVPHGTSSRSLRMVRGVVVVSLGSSSRSSRRGCGVVRASMVDSYESYSDFVKRMEQAWLISQQPRPVACTSCDSNGQVECQWCR GTGFFILGDNMLCQVPSRNTTCVICAGKGSMCCSDCKGTGFRARWLGKPPISK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G016400 [exp]	0	1
AT1G13360			unknown protein		Potri.015G054300 [exp]	2.44	0.8449
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	7.87	0.8033	SHL1.1
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	9.21	0.7741	LSD1.2
AT1G05785			Got1/Sft2-like vescicle transp...		Potri.014G151000 [exp]	9.79	0.7845
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Potri.001G377200 [exp]	10.67	0.8025	RPB19.1
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Potri.017G030000 [exp]	16.97	0.7722
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Potri.001G371900 [exp]	17.60	0.7535
AT3G62450			unknown protein		Potri.005G071700 [exp]	18.33	0.7368
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249300 [exp]	19.44	0.7485	HTA907
					Potri.006G127050 [exp]	20.71	0.7520

Compare expression of checked genes

Potri.018G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.