Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31780 724 / 0 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) AT2G11810 504 / 5e-176 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2) AT5G20410 494 / 7e-172 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266500 [exp] 895 / 0 AT4G31780 743 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.006G063300 [exp] 500 / 4e-174 AT5G20410 691 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G123000 [exp] 496 / 1e-172 AT5G20410 668 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003418 [exp] 755 / 0 AT4G31780 764 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10026895 [exp] 746 / 0 AT4G31780 758 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10016359 [exp] 495 / 3e-172 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10008048 [exp] 492 / 5e-171 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF04101 [poplar] [flax] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G016600.1 pacid=42800475 polypeptide=Potri.018G016600.1.p locus=Potri.018G016600 ID=Potri.018G016600.1.v4.1 annot-version=v4.1 ATGCATAACCCCTCGGCAGTAACAACCACCCAAGAATCAGGCTCTGTCTTTGAACTTGTAGCTCAAATGGGTGGCTTTGCTTTTAATAGAGCAGTTCAAA GCATAAACTCAAATGGGTTATCTTTTTCTAGGTCAGATTTTCTGTTTTTTGATAGCCCGGTTGGTCTAAAAACGAGAAAGGTTAATGCTTCATTGAGTTT GAGTAGTAGAAGTGGTTTTAGAAGTGTTTGGAGTGAGTTTAATAGGACTATTAGGCTCCATTCCGAGAGAATCCCAATTGGCTTTGCTTCAGTTCAGATT GGTTCAGGAGATAATAATGGTAATAATAATATTGGTAGCAATGATGGTAATAATACTAATGGGTTAAGAGATGATGGATGTGGTGCTTTGTTGGATGATG GTGTGCGTTTGAATGGTGTAGAAGGTGGGAGTCCTAAAAGGGTTCTCATTTTGATGAGTGATACTGGTGGTGGTCATAGAGCTTCTGCTGAGGCTATTAA GGCTGCCTTCAATGAAGAATTCGGTGATGAGTATCAGGTGTTTATTACTGATTTGTGGTCAGAACATACGCCTTGGCCATTTAATCAATTGCCCAGAAGC TATAATTTCCTGGTGAAACATGAGGCATTGTGGAAAATGACATATTATGGAACTGCACCACGTGTGATTCATCAATCTAATTTTGCTGCAACTTCAACAT TTATAGCTCGAGAGGTTGCAAAAGGATTGATGAAATACCAGCCTGACATCATTATCAGTGTCCATCCACTGATGCAACATGTTCCTCTTCATATATTGAG GGCAAAGGGACTTTTACAGAAGATAGTTTTTACCACTGTTGTCACCGATCTAAGCACTTGTCATCCTACATGGTTCCATAAGCTTGTGACGAGATGTTAT TGCCCATCAACAGATGTATCAAAGAGGGCAATGAAAGCTGGGCTCAAGCCCTCACAGATTAAGGTTTATGGCCTTCCTGTACGGCCTTCTTTTGTGAAGC CTGTTAGACCGAAGGGTGAATTAAGAAGAGAACTAGGAATGGATGAAGATCTTCCGGCTGTGTTACTGATGGGAGGAGGGGAAGGGATGGGTCCCATTGA GACAACTGCAAGAGCACTTGCGGATTCATTATATGATGAGAATCTTGGAGAGCCAAAAGGTCAAGTCCTCGTGATATGTGGTCGCAACAAAAAGCTCACT AACAGATTACTCTCGATTGATTGGAAGGTTCCGGTCAAGGTGGAGGGTTTTGTCACTAAAATGGAGGAGTGCATGGGTGCTTGTGACTGTATTATCACAA AGGCTGGACCAGGGACTATTGCAGAAGCAATGATTCGAGGTCTTCCCATAATTTTGAATGATTACATTGCTGGACAAGAAGTAGGCAACGTGCCTCATGT GGTAGAGAATGGATGCGGGAAGTTCTCAAAATCACCGAAAGAGATTGCAAAGATTGTTGCAGAATGGTTTGGTTCAAAGGCAGATGAACTCAAGGCCATG TCACAAAATGCACTGAAGCTGGCCAGACCTGATTCTGTATTCAAGATTGTCCATGATCTCCATGAGCTGGTCAGACAGAGAAATTTTGTCCCCCAGTATT CCCGTGCTACTTGA
AA sequence Show only first row Show all	>Potri.018G016600.1 pacid=42800475 polypeptide=Potri.018G016600.1.p locus=Potri.018G016600 ID=Potri.018G016600.1.v4.1 annot-version=v4.1 MHNPSAVTTTQESGSVFELVAQMGGFAFNRAVQSINSNGLSFSRSDFLFFDSPVGLKTRKVNASLSLSSRSGFRSVWSEFNRTIRLHSERIPIGFASVQI GSGDNNGNNNIGSNDGNNTNGLRDDGCGALLDDGVRLNGVEGGSPKRVLILMSDTGGGHRASAEAIKAAFNEEFGDEYQVFITDLWSEHTPWPFNQLPRS YNFLVKHEALWKMTYYGTAPRVIHQSNFAATSTFIAREVAKGLMKYQPDIIISVHPLMQHVPLHILRAKGLLQKIVFTTVVTDLSTCHPTWFHKLVTRCY CPSTDVSKRAMKAGLKPSQIKVYGLPVRPSFVKPVRPKGELRRELGMDEDLPAVLLMGGGEGMGPIETTARALADSLYDENLGEPKGQVLVICGRNKKLT NRLLSIDWKVPVKVEGFVTKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNDYIAGQEVGNVPHVVENGCGKFSKSPKEIAKIVAEWFGSKADELKAM SQNALKLARPDSVFKIVHDLHELVRQRNFVPQYSRAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	0	1
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Potri.011G164100 [exp]	1.73	0.8539
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	4.69	0.8532
AT4G31980			unknown protein		Potri.017G145100 [exp]	6.63	0.8134
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	8.83	0.8398	Pt-PIL5.1
AT1G66520		PDE194	pigment defective 194, formylt...		Potri.017G123300 [exp]	9.27	0.7728
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	12.00	0.8392
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	14.69	0.8068
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	16.73	0.8180
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Potri.014G049200 [exp]	17.88	0.7954
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Potri.003G119500 [exp]	21.54	0.7160	Pt-CCS52.1

Compare expression of checked genes

Potri.018G016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.