Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25060 1180 / 0 RNA recognition motif (RRM)-containing protein (.1) AT5G10800 1076 / 0 RNA recognition motif (RRM)-containing protein (.1) AT1G54080 59 / 8e-09 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 59 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17370 56 / 6e-08 UBP1B oligouridylate binding protein 1B (.1.2) AT1G49600 54 / 4e-07 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 51 / 3e-06 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 51 / 3e-06 ATRBP47C RNA-binding protein 47C (.1.2) AT3G52120 50 / 4e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT4G27000 50 / 6e-06 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265700 [exp] 1513 / 0 AT5G25060 1182 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.009G054400 [exp] 61 / 2e-09 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 54 / 4e-07 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.011G138400 [exp] 53 / 8e-07 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 53 / 8e-07 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.001G423400 [exp] 52 / 1e-06 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G166100 [exp] 52 / 1e-06 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 52 / 1e-06 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.014G157300 [exp] 49 / 1e-06 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026892 [exp] 1341 / 0 AT5G25060 1271 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10026251 [exp] 1300 / 0 AT5G25060 1223 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10042420 [exp] 1300 / 0 AT5G25060 1225 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10012071 [exp] 61 / 1e-09 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 61 / 2e-09 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 59 / 8e-09 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10031277 [exp] 56 / 8e-08 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 55 / 2e-07 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027641 [exp] 53 / 7e-07 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 53 / 8e-07 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF01805 [poplar] [flax] Surp Surp module CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain CL0020 [poplar] [flax] PF08312 [poplar] [flax] cwf21 cwf21 domain
Representative CDS sequence Show only first row Show all	>Potri.018G017200.2 pacid=42801463 polypeptide=Potri.018G017200.2.p locus=Potri.018G017200 ID=Potri.018G017200.2.v4.1 annot-version=v4.1 ATGAGTTCTTTCTCCATCACGAGAAAAAAGACTCCATTCCAGAAGCATAGAGAGGAAGAAGAGGCGAGGAAAAAGAGAGCGGAGGATGAAACAGCTCGTT TGTATGCGGAGTTTGTGGAGTCGTTTCAAGGGGATAATGCGCCCGGATCAAAGACTTTTGTTCGAGGTGGAACTATCAATCCCAATGAGAAATTGAAGAT TGATTCTAAAGGTGAAAAGTCGAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTCATACCACCTCCTATGGCATCCAAGGGA AAAGAACTTGAGAAGAAGAGGGAGGAGGAGAGACCAAAGGAGAAGGAAAAGGGAAAGACTCGAAACATAGATCATTTTATGGAGGAGCTGAAGCATGAAC ATGAGATGAGGGAGAGGCGAAATCAAGAACGGGAACATTGGCGCGAAGGGCGCCATAATGAAAGTTCTGCACCATCTAGTCGTTTTGATGAACTACCTGA TGACTTTGATCCAAGTGGAAAGCTGCCTGGATCATTTGATGACGTTGATCCACAAACCACGAATCTTTATGTTGGGAATCTTTCACCACAGGTCGATGAG AATTTTCTTCTGAGAACTTTTGGAAGATTTGGACCCATAGCTAGTGTGAAGATAATGTGGCCCAGGACAGAAGAAGAGCGGAGACGGCAAAGAAACTGTG GATTCGTAGCATTCATGAATAGAGTTGATGGGCAGGCTGCAAAGGATGAAATGCAAGGAGTTGTTGTGTATGAATATGAGTTGAAAATTGGGTGGGGAAA ATCCGTGGCTCTTCCATCACAGGCATTACCTGCTCCACCACCTGGACAAATGGCTATTAGGAGTAAAGAGGGTGCCACTGTGATTCTCTCTGGTCCATCA GGTCCACCAGTCACCTCTGTCCCAAATCAGAACTCTGAACTGGTTCTTACTCCAAATGTTCCTGATATAATGGTTGCTCCACCTGAGGATGATCACCTCC ACCATATGATTGATACAATGGCTCTATATGTTCTTGATGGAGGATGTGCTTTTGAACAAGCTATCATGCAAAGGGGTCGTGGGAATCCTCTTTTCAACTT CTTGTTTGAGCTTGGATCAAAAGAACATACTTATTATGTTTGGAGGCTCTATTCTTTTGCTCAGGGTGATACTCTTCAAAGGTGGCGAACAGAGCCTTTT ATCATGATAACTGGTAGCGGAAGATGGGTGCCACCACCTCTGCCCACAGCAAAGAGCCCGGAGCATGAAAAGGAGTCTGGTAGTACATATGCTGCTGGAA GAAGCAGGCGAGTTGACTCTGAAAGAACACTGACTGATCCACAAAGGGATGAGTTTGAGGATATGCTGCGTGCATTAACATTGGAAAGAAGTCAGATAAA GGATGCTATGGGTTTTTCCTTGGATAATGCTGATGCTGCAGGAGAGGTAGTTGAAGTTCTGACAGAATCTTTGACACTTAAAGAAACTCCCATTCCAACG AAAGTTGCAAGACTCATGCTTGTCTCTGACATCCTTCATAATAGTAGTGCTCCTGTAAAAAATGCATCTGCATATCGCACTAAGTTTGAAGCTGCTCTAC CTGACATAATGGAAAGCTTCAATGACTTGTATCGTAGTATAACTGGAAGGATTACTGCTGAGGCCCTTAAGGAACGGGTTCTGAAAGTGTTGCAAGTATG GTCAGATTGGTTTCTGTTTTCAGATGCATATGTGAATGGACTACGGGCTACTTTTCTACGTTCTAGTAACTCTGGTGTGATCCCTTTTCATTCTATATGT GGTGATGCACCCGAAATAGAGAAAAAGAGTAGTTCAGAAGACGCAGTTGAAGGGGCAAAGATCAATCAAGATGCTGCATTAGCAATGGGCAAAGGAGCAG CTGTGAAGGAGCTAATGAATCTTCCTCTTGCTGAGTTGGAAAGACGTTGCAGACATAATGGATTGTCGCTTGTTGGTGGTAGAGAGATGATGGTGGCACG ATTGCTGAGCCTGGAAGAGGCAGAAAGACAAAGGGGATATGAATTAGATGATGACTTGAAAATTGCTCAGAGCAATTCAAGTTCCAGTAGATATTCAAGT GTTCACAGAGAAATGAATGTTGAAGCAGAGCCAGTGGGATCGACAGGGTGGAATGTTTATGGGGAGGATGAGATGCCATCTCAGAACAAAGGGTCTGTAT CTGTGGCTTCAACCCTCCTGATTAAGCAACCTGAACTAAAAGCCTTTGCTAAGAAAGAGAAGAACGATCCTGTTCTGCCAGCATCTAAATGGGCTAGAGA TGATGATGAAAGTGACGATGAACAAAAGAGAAGTGCTAGGGATCTCGGGTTGAGCTACTCATCTTCTGGAAGTGAAAATGCTGGTGATGGTCAAGGTAAG GCAGATGAAATGGAATTCGCAACTGATGCAAACATTCCAACACAACCTGATAGTGGAATGAACGAAGAGCAGAGACAAAAATTGAGACGTTTGGAAGTTG CTTTAATTGAGTATCGTGAATCCCTTGAGGAGCGAGGAATGAAAAGTTCAGTGGAAATTGAGGGGAAAGTTGCAATACATCGGAAATGGCTGGAGTCTGA ATATGGCTTATCAAGTTCTAATGAAGATGTCACTAGCAAAAAGAGCATATCTTCTGAAAGGAGGGATAGACGTAGTGATAATCATGATTCTTCAAGAAAG CGACACCGCAATGAAAGCAGAAGTGAAAGCCCGCAACGAAAATTATCACTTAGGGACAGGGAGAGGGGAAATGACTCAACAGGGGACCGGGAAGGGCATA GGGAGAGATTGGAAAGTGAAAGACGGGACCGTGATCGCCGGGAAAAGAGTGGAAGCAGAGAGCTGGATGATCATGACAGAAGCAGGGACAGGGACAGGAG GAGACGCGTAAAATGA
AA sequence Show only first row Show all	>Potri.018G017200.2 pacid=42801463 polypeptide=Potri.018G017200.2.p locus=Potri.018G017200 ID=Potri.018G017200.2.v4.1 annot-version=v4.1 MSSFSITRKKTPFQKHREEEEARKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKIDSKGEKSKDGVSVPKKGSRYVPSFIPPPMASKG KELEKKREEERPKEKEKGKTRNIDHFMEELKHEHEMRERRNQEREHWREGRHNESSAPSSRFDELPDDFDPSGKLPGSFDDVDPQTTNLYVGNLSPQVDE NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRVDGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPS GPPVTSVPNQNSELVLTPNVPDIMVAPPEDDHLHHMIDTMALYVLDGGCAFEQAIMQRGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPF IMITGSGRWVPPPLPTAKSPEHEKESGSTYAAGRSRRVDSERTLTDPQRDEFEDMLRALTLERSQIKDAMGFSLDNADAAGEVVEVLTESLTLKETPIPT KVARLMLVSDILHNSSAPVKNASAYRTKFEAALPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSSNSGVIPFHSIC GDAPEIEKKSSSEDAVEGAKINQDAALAMGKGAAVKELMNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAERQRGYELDDDLKIAQSNSSSSRYSS VHREMNVEAEPVGSTGWNVYGEDEMPSQNKGSVSVASTLLIKQPELKAFAKKEKNDPVLPASKWARDDDESDDEQKRSARDLGLSYSSSGSENAGDGQGK ADEMEFATDANIPTQPDSGMNEEQRQKLRRLEVALIEYRESLEERGMKSSVEIEGKVAIHRKWLESEYGLSSSNEDVTSKKSISSERRDRRSDNHDSSRK RHRNESRSESPQRKLSLRDRERGNDSTGDREGHRERLESERRDRDRREKSGSRELDDHDRSRDRDRRRRVK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	0	1
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Potri.012G065600 [exp]	1.00	0.9087
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	1.41	0.8804	PAFC901
AT5G41770			crooked neck protein, putative...		Potri.003G137200 [exp]	5.47	0.8403
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	7.93	0.8596
AT5G17510			unknown protein		Potri.019G042800 [exp]	8.00	0.7953
AT5G63550			DEK domain-containing chromati...		Potri.012G102500 [exp]	9.53	0.8329
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	10.58	0.8307
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	12.96	0.8506
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	14.96	0.8026
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	15.55	0.8095

Compare expression of checked genes

Potri.018G017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.