Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10820 612 / 0 Major facilitator superfamily protein (.1) AT1G79710 458 / 2e-156 Major facilitator superfamily protein (.1) AT5G25050 447 / 3e-152 Major facilitator superfamily protein (.1) AT5G25040 392 / 2e-130 Major facilitator superfamily protein (.1.2.3) AT2G32040 163 / 2e-43 Major facilitator superfamily protein (.1) AT5G54860 161 / 4e-43 Major facilitator superfamily protein (.1) AT1G04570 99 / 2e-21 Major facilitator superfamily protein (.1) AT2G33280 78 / 3e-15 Major facilitator superfamily protein (.1) AT1G64890 73 / 2e-13 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265500 [exp] 897 / 0 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 481 / 1e-165 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 470 / 5e-161 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 459 / 5e-157 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 156 / 8e-41 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 154 / 1e-40 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 150 / 6e-39 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 103 / 5e-23 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 100 / 4e-22 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026890 [exp] 626 / 0 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 462 / 5e-158 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 461 / 3e-157 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 437 / 3e-148 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 428 / 1e-144 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 157 / 5e-41 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 154 / 6e-40 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 88 / 4e-18 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10023708 [exp] 85 / 4e-17 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10024977 [exp] 71 / 1e-12 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G017400.2 pacid=42801148 polypeptide=Potri.018G017400.2.p locus=Potri.018G017400 ID=Potri.018G017400.2.v4.1 annot-version=v4.1 ATGGATCCCCTTGAAACCCAAGAACTAGTTGGAAAATCTCCAACAGATTCTTCTAAACAGGCCTTGCCCATTTCAGAACAAGATCAAGGGCGTCAGTCAT CAGAAACATGTGCAAGAGCAAGTCCTCTATCCATCTTCATGGAACCATTTCAATGGTTACAAATGCTCTCTTCCCAGCTAAACCCAACATTCATTTTTGG TGTAGTTGTGGTTTATGGTCTTAGCCAGGGCTTCTCTGGATCTTTCTTTAAAGTTGTCACAGACTTCTACTGGAAAGATGTTCAAAAGGTTCAACCATCA GCAGTGCAGTTGTACATAGGCCTATACTACATCCCATGGGTCATGAAACCAATTTGGGGCCTCTTGACTGATGTTTTTCCAGTCAGAGGATATAAAAGAA GGCCATATTTTTTAGTGGCTGGTGTTCTTGGTTGTGTCTCAGCATTGATGGTAGCTACTCTTGGTAAGGTGCCTATTGCTGTGGCATTGAGTTGCTTGAT AGGTATAACTGCTGGGGTTGCAATAGCAGATGTGACTATTGATGCTTGTATTGCAAAAAACAGTATTGAGATCAGGTCTTTGGCGCCAGACATGCAGTCT CTTTGTAGGATTTGTTCTTCACTTGGGGCTTTGATTGGTTACTCTTCCAGTGGTTTTTTTGTTCACCATCTTGGACCTCAGGCATCATTGGTTCTTTTGG CAGTCCCACCAACTATATTGATAGTGTTGGGGTTTGTGATCTATGAAGTGAGATCTACAACTCTCCAATCTGAGAAGAAGAAGGCAGTGGAGGACTTACA AATAGCATTAAGGGGCATGTCGAAAACTATTAAGTTGCCGCAAGTGTGGAAGCCATCACTGTACATGTATCTATCTTTGGCTCTCAGTATAAGCACTCAT GAAGGGCAATTTTATTGGTATACAGATCCAAAAGCTGGCCCTGCATTCTCACAGGAGTTTGTCGGGATGATTTATGCAGTTGGTGCATTGGCTTCCATAG CGGGGGTCTTGATATATCAGAAGACTCTGAAGGACTATCCATTCAGAAGCCTACTCCTTTATGCACAACTCCTATATGGCATGACCGGAATGCTCGATGT TATCTTTTTCCTTCGATGGAACTTAGTCATTGGAATTCCTGATTACTTCTTTGTAATTATGGAAGAATGTGTCTCCCGAATCATATCCAGAATTAGGTGG ATCCCAATGATTGTTTTAAGCACTCGGCTATGTCCTCTAGGCATTGAAGGGACTTTTTTTGCACTGTTGATGTGCATCGATAGTCTTGGCTCGCTCTCTT CCAAATGGGGTGGAGGAGTTGTTCTTCATCTATTTCATGTAACAAGAACTGATTTCACAAACTTATGGTTGGCCATTCTCATAAGAAATTTTCTGAGGTT TGCAACAATAGGTTTGATTTTTCTTGTTCCCAAGGGTGATCAAGAGGATGACTTGATTCCCCCGGATATTTTGACAGCAAATTCTGATGCAAGTCTAGAT GATGATGGCTTGGAACTTGCTCCTGTCAAGGAGACAAGTGAAGAAGCCCGGATTTTCGCCATTATCTCTGATACACCCCCGCAAGATAGGGCTGCCGTCA GCAAGACCAATCTTGAACCGCAACTGTTTTGTACGATGCTTCGACAGAAGCTCGGTGGGAAGATCCGCAAGCTAATCTTGAGTGTGAAAATGAAGAACTT CCAGCATGCCTTTTTGAACCATATCATGGACAAAATGCAGGTCAATTTGAAGGTGTTTCATGCGAGAATGTTGCCCTGGATTAAGACTAAGTTCAGTAGC ACCCAAGTTGTCACAGAGTAA
AA sequence Show only first row Show all	>Potri.018G017400.2 pacid=42801148 polypeptide=Potri.018G017400.2.p locus=Potri.018G017400 ID=Potri.018G017400.2.v4.1 annot-version=v4.1 MDPLETQELVGKSPTDSSKQALPISEQDQGRQSSETCARASPLSIFMEPFQWLQMLSSQLNPTFIFGVVVVYGLSQGFSGSFFKVVTDFYWKDVQKVQPS AVQLYIGLYYIPWVMKPIWGLLTDVFPVRGYKRRPYFLVAGVLGCVSALMVATLGKVPIAVALSCLIGITAGVAIADVTIDACIAKNSIEIRSLAPDMQS LCRICSSLGALIGYSSSGFFVHHLGPQASLVLLAVPPTILIVLGFVIYEVRSTTLQSEKKKAVEDLQIALRGMSKTIKLPQVWKPSLYMYLSLALSISTH EGQFYWYTDPKAGPAFSQEFVGMIYAVGALASIAGVLIYQKTLKDYPFRSLLLYAQLLYGMTGMLDVIFFLRWNLVIGIPDYFFVIMEECVSRIISRIRW IPMIVLSTRLCPLGIEGTFFALLMCIDSLGSLSSKWGGGVVLHLFHVTRTDFTNLWLAILIRNFLRFATIGLIFLVPKGDQEDDLIPPDILTANSDASLD DDGLELAPVKETSEEARIFAIISDTPPQDRAAVSKTNLEPQLFCTMLRQKLGGKIRKLILSVKMKNFQHAFLNHIMDKMQVNLKVFHARMLPWIKTKFSS TQVVTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	0	1
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	1.00	0.9054
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	8.06	0.7826	Pt-PNFT3.4
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	12.24	0.7615
AT5G27470			seryl-tRNA synthetase / serine...		Potri.007G070501 [exp]	15.87	0.6948
AT3G05610			Plant invertase/pectin methyle...		Potri.005G022900 [exp]	22.80	0.5964	PEF1.2
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.009G083500 [exp]	25.92	0.5685
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Potri.005G090100 [exp]	30.80	0.4552
					Potri.002G025701 [exp]	32.03	0.5345
AT4G20820			FAD-binding Berberine family p...		Potri.001G440700 [exp]	34.48	0.5195
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.014G054700 [exp]	36.08	0.4838

Compare expression of checked genes

Potri.018G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.