Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57870 810 / 0 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 734 / 0 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT4G30680 224 / 1e-67 Initiation factor eIF-4 gamma, MA3 (.1) AT1G62410 187 / 1e-54 MIF4G domain-containing protein (.1) AT3G60240 189 / 1e-49 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT1G56040 83 / 2e-16 HEAT/U-box domain-containing protein (.1) AT4G24800 66 / 1e-10 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 59 / 9e-09 MA3 domain-containing protein (.1.2) AT3G48390 57 / 3e-08 MA3 domain-containing protein (.1) AT1G22730 48 / 2e-05 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265300 [exp] 1200 / 0 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G104100 [exp] 951 / 0 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 912 / 0 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 202 / 9e-54 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 196 / 8e-52 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.015G088300 [exp] 57 / 3e-08 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.012G091900 [exp] 55 / 2e-07 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.005G199200 [exp] 52 / 1e-06 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022168 [exp] 879 / 0 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10010782 [exp] 860 / 0 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 619 / 0 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035813 [exp] 619 / 0 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 221 / 8e-68 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10042856 [exp] 209 / 6e-56 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10028156 [exp] 209 / 7e-56 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036256 [exp] 148 / 8e-39 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10018085 [exp] 54 / 4e-07 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10042080 [exp] 54 / 6e-07 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02847 [poplar] [flax] MA3 MA3 domain CL0020 [poplar] [flax] TPR PF02854 [poplar] [flax] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Potri.018G017600.1 pacid=42802164 polypeptide=Potri.018G017600.1.p locus=Potri.018G017600 ID=Potri.018G017600.1.v4.1 annot-version=v4.1 ATGCAGGCAGATCAGACAACGGTGATAAGCTTGAGACCAGGAGGAGGTAGCAATGGTGGTCCCCGTGGCACCAGATTTTCCACCTCTCGCTTTGAGTCTG CTTCTGCTTCGCTTTCTGATGCTTCTCAGTCTTTCCCTTCTTTCAAGACTGGTGAATTGCGGTTTGAAGACCATGAGCGCATTCGCTACACGCGAGACCA ACTGTTGCAACTTAAAGAGGTTGAAAATGTTCCAGAGGATATTCTGAAGATCAGACAAGAAATTGAGTCCGAGTTTGTTGGTGAGGATCAAACTTGGAGC CATGCAGATGGCAGCCTCCAGCCTCAATCTCAGAGTCGTTATTCTGAGCCAGACAACCGTGATTGGCGTGGTAGGTCAGCAGCTTTTGGAGAGGACAGAT CTCGGGAAGCAATTCGAGAAAATAAGGAGTTTTACAACCGGCAAGACCAGCTAAACTCCCAGTTTGCAAGTGCTCAAATCACTGCTAACCAACGGGTAGG GCCTGCTCCTGCTCTGATCAAGGCTGAAGTGCCATGGTCAGTTCGAAGAGGCAATCTCTCTGAGGAGGAACGTGTCTTGAAGACAGTGAAAGGTATATTA AACAAATTGACACCAGAGAAGTTTGATGTTCTCAAGGGGCAACTGATTGACTCTGGAATTACGACACCTGATATTTTAAAGGGTGTTATCTCACTAATAT TTGACAAGGCAGTGCTGGAGCCCACATTCTGTCCCATGTATGCTCTTTTATGCTCTGACCTTAATGAGAAGCTTCCTCCATTCCCATCTGATGAGCCTGG TGGGAAAGAAATCACTTTTAAGCGGATTCTTTTGAACAATTGCCAGGAGGCATTTGAAGGTGCTGGCAATCTGAGGGCAGAAATTAGCAAGTTGACTGCT CCTGAACAAGAAATGGAACGCAGGGATAAGGAACGATTGGTTAAGCTGCGAACTATGGGGAACATGCGCCTTATTGGGGAACTTTTGAAGCAGAAGATGG TGCCTGAAAAGATTGTCCACCATATTGTTCAGGAATTATTGGGCAATGACAGTAAAACTTGCCCAGCAGAAGAAAATGTCGAGGCAATATGTCAATTTTT CAACACCATAGGCAAGCAACTGGATGAAAACCCAAAAGCTCGGCGGGTTAATGATGTTTATTTCAGCAGGTTGAAGGAGTTGACAACAAATCCACATCTT GCACCACGGTGTAGGTTCATGGTTCGTGATGTCCTTGATCTTCGGGCTAACAGCTGGGTCCCTAGACGTGAAGAGGTTAAAGCAAAGACCATCTCTGAAA TCCATTCAGAAGCTGAGAAGAATCTCGGATTGCGTCCAGGTGCAACTGCAGTCATGAGAAATGGTCGTAATGCTACTGGGGGTGTGGGCCCTGGTGGTTT CCCCATTGGCCGACCAGGCTCAGGGGGTATGATGCCTGGAATGCCTGGGATGATGAAAATGCCTGGAATTCCTGGGCTTGATGCTGACAACTGGGAAGTT CCTCGATCTAGAGCAATGCCAAGGGGCAATAGTTTTGGCCCAACCCACGTCGCCGGGCATGTCCCCACTTCCCTGATCAACAAATCACCACCACTTAATG CAAGACTTCTACCTCAGGGAAGTGGTGGCGTCATAGCTGGGAAACCAAGTCTGCTATTGCAGGGCAGTGGTGCTCCTTCCCGACCTGGTTTTGCTACAAG AACTGAACCTGCAGGTCAAACTCCTAAGCCTGTTGCTCCAGCTGTGTCAGCAATTCCTTCTCCTCAGAAGCCTCTTGCTCCTACTACAAGGTCAAATCCT GATGATCTTCGCAGGAAAACCATTTCTCTGCTGGAAGAATATTTCAGTGTTCGAATTCTTGATGAAGCACTTCAATGTGTGGAGGAGTTGAAAGATACTA GTTTTCACCCTGAGGTTGCTAAAGAAGCTATTGCTCTTGCACTGGAGAAGAGCCCACCCTGTGTGGAACCTGTCGTAAAGCTTCTTGAATTCTTGCTCAC TAAAAATGTCCTCACAGCTAGAGATATTGGAACTGGATGTGTTCTTTATGGCTCATCGTTGGATGATATTGGCATTGATTTACCCAAAGCACCAAATAAC TTTGGTGAGATTCTTGGGAGCTTGGTTGTGGCTCAGGGTCTGGACTTCGAGGTGTTTAAGGAAGTTCTGAAGAAGGTGGAAGATGACAGGTTCAGGAAAG CTATATTTAGCAGTGCCATGTTGAGCATCAATTCAAACCCTTCTGGGCAAGAAGTGTTGGCAACACAGGGTTCTAATATTCAGGCTTGTGAGAGTTTGCT CTCTTAA
AA sequence Show only first row Show all	>Potri.018G017600.1 pacid=42802164 polypeptide=Potri.018G017600.1.p locus=Potri.018G017600 ID=Potri.018G017600.1.v4.1 annot-version=v4.1 MQADQTTVISLRPGGGSNGGPRGTRFSTSRFESASASLSDASQSFPSFKTGELRFEDHERIRYTRDQLLQLKEVENVPEDILKIRQEIESEFVGEDQTWS HADGSLQPQSQSRYSEPDNRDWRGRSAAFGEDRSREAIRENKEFYNRQDQLNSQFASAQITANQRVGPAPALIKAEVPWSVRRGNLSEEERVLKTVKGIL NKLTPEKFDVLKGQLIDSGITTPDILKGVISLIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKEITFKRILLNNCQEAFEGAGNLRAEISKLTA PEQEMERRDKERLVKLRTMGNMRLIGELLKQKMVPEKIVHHIVQELLGNDSKTCPAEENVEAICQFFNTIGKQLDENPKARRVNDVYFSRLKELTTNPHL APRCRFMVRDVLDLRANSWVPRREEVKAKTISEIHSEAEKNLGLRPGATAVMRNGRNATGGVGPGGFPIGRPGSGGMMPGMPGMMKMPGIPGLDADNWEV PRSRAMPRGNSFGPTHVAGHVPTSLINKSPPLNARLLPQGSGGVIAGKPSLLLQGSGAPSRPGFATRTEPAGQTPKPVAPAVSAIPSPQKPLAPTTRSNP DDLRRKTISLLEEYFSVRILDEALQCVEELKDTSFHPEVAKEAIALALEKSPPCVEPVVKLLEFLLTKNVLTARDIGTGCVLYGSSLDDIGIDLPKAPNN FGEILGSLVVAQGLDFEVFKEVLKKVEDDRFRKAIFSSAMLSINSNPSGQEVLATQGSNIQACESLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G017600 [exp]	0	1
AT1G16870			mitochondrial 28S ribosomal pr...		Potri.013G153900 [exp]	2.00	0.8710
AT1G18070			Translation elongation factor ...		Potri.019G062500 [exp]	5.29	0.8574
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.001G013500 [exp]	9.00	0.8330	Pt-MOD1.1
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.013G058500 [exp]	14.07	0.8289
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.017G014800 [exp]	14.62	0.7729
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.008G182300 [exp]	15.16	0.8433
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.006G047600 [exp]	18.41	0.8553	EIF3.4
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.014G004100 [exp]	29.59	0.8475
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	30.00	0.8362	Pt-I.1
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	30.46	0.8346	Pt-TOM40.1

Compare expression of checked genes

Potri.018G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.