Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31860 609 / 0 Protein phosphatase 2C family protein (.1.2) AT2G25070 584 / 0 Protein phosphatase 2C family protein (.1) AT2G33700 146 / 2e-40 Protein phosphatase 2C family protein (.1) AT1G48040 145 / 7e-40 Protein phosphatase 2C family protein (.1) AT3G51470 143 / 2e-39 Protein phosphatase 2C family protein (.1) AT2G25620 142 / 6e-39 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G10740 135 / 1e-36 Protein phosphatase 2C family protein (.1) AT5G24940 135 / 7e-36 Protein phosphatase 2C family protein (.1) AT1G43900 130 / 2e-34 Protein phosphatase 2C family protein (.1) AT5G53140 126 / 8e-33 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265100 [exp] 682 / 0 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.003G183800 [exp] 562 / 0 AT4G31860 547 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G043000 [exp] 559 / 0 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017800 [exp] 317 / 6e-109 AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) Potri.018G115100 [exp] 152 / 7e-43 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.007G058700 [exp] 148 / 5e-41 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 145 / 5e-40 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 144 / 1e-39 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.005G102500 [exp] 143 / 3e-39 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003423 [exp] 645 / 0 AT4G31860 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042416 [exp] 621 / 0 AT4G31860 610 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026253 [exp] 615 / 0 AT2G25070 607 / 0.0 Protein phosphatase 2C family protein (.1) Lus10026885 [exp] 615 / 0 AT4G31860 584 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026886 [exp] 167 / 5e-47 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013124 [exp] 153 / 5e-43 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 153 / 6e-43 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 147 / 1e-40 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 147 / 2e-40 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 145 / 7e-40 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C CL0238 [poplar] [flax] PP2C PF07228 [poplar] [flax] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Potri.018G017701.1 pacid=42802055 polypeptide=Potri.018G017701.1.p locus=Potri.018G017701 ID=Potri.018G017701.1.v4.1 annot-version=v4.1 ATGGGGATATACCTTAGTTCTCCTAAGACGGAGAAATTTTCAGAGGATGGCGAGAATGGTAGGCTTAGATATGGCTTATCATCCATGCAAGGTTGGCGTG CAACCATGGAAGATGCACATGCTGCAATAACTGATTTGGACGCTACCACTTCATTCTTTGGTGTTTATGATGGACATGGAGGTAAAGTAGTTGCAAAATT CTGTGCCAAGTATCTCCATCGGCAGGTTCGCAAGAATGAAGCATATGCAGCAGGAGATATGGGAACTTCTGTCCAGAAAGCATTTTTCAGAATGGATGAG ATGATGCGTGGCCAGAGAGGGTGGCGGGAACTAGCTGCCTTGGGTGATAAGATAACCAAGTTTACTGGCATGATAGAAGGGTTGATATGGTCCCCAAGGG GTGGTGTTTGTCATGAACAGCCTGATGATTGGGCTTTTGAAGAGGGTCCTCACTCTGACTTCTCTGGACCAACTTCTGGGAGCACAGCCTGTGTTGCGAT TATTAGAAACAACCACCTCATTGTTGCGAATGCTGGTGATTCTAGATGTGTGATATCAAGAAAGGGTCAGGCTTACAATTTGTCTAGAGATCACAAACCT GATCTTGAGGCTGAGAAAGAACGGATTTTAAAAGCTGGTGGTTTCATACATGCAGGGCGGGTCAATGGCAGTTTAAATCTTTCAAGGGCTATAGGTGATG TGGAGTTCAAGCAGAATAAATATCTACCTGTTGAAAAGCAAATCGTGACAGCCAATCCAGATATAAACACTCTTGAGCTTTGTGATGACGATGATTTTCT TGTGCTGGCATGTGATGGAATATGGGATTGCATGTCAAGCCAGCAACTAGTAGATTTTATTCATGAACAACTACATTCGGAAAACAAGCTCTCTGCAGTG TGTGAGAGAGTGCTTGATAGGTGTTTGGCGCCATCAACAGCAGGTGGTGAGGGATGTGACAATATGACCATGATCGTGGTACAGTTTAAGAAACCTATAG GCCCCCCTGCTTCCGCAGATGAGCAATCCTCACAATCTGAACCTGCTGATGCCGATTCTAAACCAGAGGAAAGTTAA
AA sequence Show only first row Show all	>Potri.018G017701.1 pacid=42802055 polypeptide=Potri.018G017701.1.p locus=Potri.018G017701 ID=Potri.018G017701.1.v4.1 annot-version=v4.1 MGIYLSSPKTEKFSEDGENGRLRYGLSSMQGWRATMEDAHAAITDLDATTSFFGVYDGHGGKVVAKFCAKYLHRQVRKNEAYAAGDMGTSVQKAFFRMDE MMRGQRGWRELAALGDKITKFTGMIEGLIWSPRGGVCHEQPDDWAFEEGPHSDFSGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKP DLEAEKERILKAGGFIHAGRVNGSLNLSRAIGDVEFKQNKYLPVEKQIVTANPDINTLELCDDDDFLVLACDGIWDCMSSQQLVDFIHEQLHSENKLSAV CERVLDRCLAPSTAGGEGCDNMTMIVVQFKKPIGPPASADEQSSQSEPADADSKPEES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	0	1
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	1.41	0.8160	SIP1.3
AT1G54460			TPX2 (targeting protein for Xk...		Potri.013G042800 [exp]	2.44	0.8031
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	5.29	0.8193
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.002G004600 [exp]	7.54	0.7276
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	10.00	0.7474
AT5G13810			Glutaredoxin family protein (....		Potri.001G026600 [exp]	10.24	0.7249
AT5G46170			F-box family protein (.1)		Potri.004G065900 [exp]	10.67	0.6798
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.003G181400 [exp]	13.41	0.7638	CCR.10,CCR7
AT1G66120			AMP-dependent synthetase and l...		Potri.006G036300 [exp]	14.14	0.7499
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	18.76	0.6913

Compare expression of checked genes

Potri.018G017701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.